1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tacatagagaagcgtataataaaacatatccatgtgctttaaattagttgttgtcaagtcttataaggaaaattatcttcttcattgcatcttctgtcagGGGCCATGGCATTTGATGTAGAATATGCTAGGTGGCTGGAAGAGCAGAACCGACAAATCAACGAACTGAGATCAGCGGTCAATTCTCATGCAAGCGATGC
species | Vitis vinifera |
transcript | Vv13s0084g00660.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAATG GGGCCATGGCATTTGATGTAGAATATGCTAGGTGGCTGGAAGAGCAGAACCEST: gi|110687850|gb|EE065730.1|EE065730
genomic: TATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAATGgtactccctt ... cttctgtcagGGGCCATGGCATTTGATGTAGAATATGCTAGGTGGCTGGAAGAGCAGAACC
EST: TATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAATG GGGCCATGGCATTTGATGTAGAATATGCTAGGTGGCTGGAAGAGCAGAACCEST: gi|30301282|gb|CB978076.1|CB978076
genomic: TATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAATGgtactccctt ... cttctgtcagGGGCCATGGCATTTGATGTAGAATATGCTAGGTGGCTGGAAGAGCAGAACC
EST: TATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAATG GGGCCATGGCATTTGATGTAGAATATGCTAGGTGGCTGGAAGAGCAGAACCEST: gi|110685242|gb|EE063437.1|EE063437
genomic: TATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAATGgtactccctt ... cttctgtcagGGGCCATGGCATTTGATGTAGAATATGCTAGGTGGCTGGAAGAGCAGAACC
EST: TATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAATG GGGCCATGGCATTTGATGTAGAATATGCTAGGTGGCTGGAAGAGCAGAACCEST: gi|77583990|gb|DV221036.1|DV221036
genomic: TATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAATGgtactccctt ... cttctgtcagGGGCCATGGCATTTGATGTAGAATATGCTAGGTGGCTGGAAGAGCAGAACC
EST: TATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAATG GGGCCATGGCATTTGATGTAGAATATGCTAGGTGGCTGGAAGAGCAGAACCEST: gi|110383071|gb|EC947420.1|EC947420
genomic: TATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAATGgtactccctt ... cttctgtcagGGGCCATGGCATTTGATGTAGAATATGCTAGGTGGCTGGAAGAGCAGAACC
EST: TATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAATG GGGCCATGGCATTTGATGTAGAATATGCTAGGTGGCTGGAAGAGCAGAACCEST: gi|110428204|gb|EC994669.1|EC994669
genomic: TATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAATGgtactccctt ... cttctgtcagGGGCCATGGCATTTGATGTAGAATATGCTAGGTGGCTGGAAGAGCAGAACC
EST: TATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAATG GGGCCATGGCATTTGATGTAGAATATGCTAGGTGGCTGGAAGAGCAGAACC
genomic: TATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAATGgtactccctt ... cttctgtcagGGGCCATGGCATTTGATGTAGAATATGCTAGGTGGCTGGAAGAGCAGAACC
agttgttgtcaagtcttataaggaaaattatcttcttcattgcatcttctgtcagGGGCCATGGCATTTGATGTAGAATATGCTAGGTGGCTGGAAGAGCAGAACCGACAAATCAACGAACTGAGATCAGCGGTCAATTCTCATGCAAGCGATGC
tcttctgtc CT-rich tract
ttataaggaaaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacatagagaagcgtataataaaacatatccatgtgctttaaattagttgttgtcaagtcttataaggaaaattatcttcttcattgcatcttctgtcagGGGCCATGGCATTTGATGTAGAATATGCTAGGTGGCTGGAAGAGCAGAACCGACAAATCAACGAACTGAGATCAGCGGTCAATTCTCATGCAAGCGATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- -atagaga
- - - - - - - - -aataaaa
- - - - - - - - - - - - - - - catgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - -tcaagtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaggaaa