1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ACAGAGGGGAACTCCATCCATTCTTATCGAGTTTCTGACTTTGGGACACTTGAGCAATCCATTGGGTTTCATTTAGAGGATGCTGTGGACCTGAGTGGAAgtgagtattcagtaatccaactcaataagagattaaagcaatgatacatgtgttttgtgttccatcatttgatgggcttattcgaattgttttaataaca...
species | Vitis vinifera |
transcript | Vv13s0084g00660.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGAGCAATCCATTGGGTTTCATTTAGAGGATGCTGTGGACCTGAGTGGAA GCACTGCATTCAATTCGACAAAACCAAGTGGTCGAGCAGTTACTTCTGATCEST: gi|30301282|gb|CB978076.1|CB978076
genomic: TGAGCAATCCATTGGGTTTCATTTAGAGGATGCTGTGGACCTGAGTGGAAgtgagtattc ... cataatgaagGCACTGCATTCAATTCGACAAAACCAAGTGGTCGAGCAGTTACTTCTGATC
EST: TGAGC-ATCCATTGGGTTTCATTTAGAGGATGCTGTGGACCTGAGTGGAA GCACTGCATTCAATTCGACAAAACCAAGTGGTCGAGCAGTTACTTCTGATCEST: gi|161706642|gb|FC056331.1|FC056331
genomic: TGAGCAATCCATTGGGTTTCATTTAGAGGATGCTGTGGACCTGAGTGGAAgtgagtattc ... cataatgaagGCACTGCATTCAATTCGACAAAACCAAGTGGTCGAGCAGTTACTTCTGATC
EST: TGAGCAATCCATTGGGTTTCATTTAGAGGATGCTGTGGACCTGAGTGGAA GCACTGCATTCAATTCGACAAAACCAAGTGGTCGAGCAGTTACTTCTGATC
genomic: TGAGCAATCCATTGGGTTTCATTTAGAGGATGCTGTGGACCTGAGTGGAAgtgagtattc ... cataatgaagGCACTGCATTCAATTCGACAAAACCAAGTGGTCGAGCAGTTACTTCTGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAGAGGGGAACTCCATCCATTCTTATCGAGTTTCTGACTTTGGGACACTTGAGCAATCCATTGGGTTTCATTTAGAGGATGCTGTGGACCTGAGTGGAAgtgagtattcagtaatccaactcaataagagattaaagcaatgatacatgtgttttgtgttccatcatttgatgggcttattcgaattgttttaataaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagcaa