1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TAGTGGTAGTGTAGAGAACTGGGGAGAGTCTGCAATGGCAGATGCCAGTCCTAGGACTGATATCTCGACAGACGTGGATACAGATGATAAAGTTCAGAGGgtgatctctctctctctctcaacatcttacatcctgcactgcattaattgagttatgttttgcatggtatatctatcaagacttgttcatatctctcagt...
species | Vitis vinifera |
transcript | Vv13s0084g00660.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTAGGACTGATATCTCGACAGACGTGGATACAGATGATAAAGTTCAGAGG TTTGAAAGGGGTCAACCTGCTTCCAATATGGCTTCTGATTCCAGCGACAGGEST: gi|156737550|gb|EV241663.1|EV241663
genomic: CTAGGACTGATATCTCGACAGACGTGGATACAGATGATAAAGTTCAGAGGgtgatctctc ... tgatattcagTTTGAAAGGGGTCAACCTGCTTCCAATATGGCTTCTGATTCCAGCGACAGA
EST: CTAGGACTGATATCTCGACAGACGTGGATACAGATGATAAAGTTCAGAGG TTTGAAAGGGGTCAACCTGCTTCCAATATGGCTTCTGATTCCAGCGACAGAEST: gi|110687850|gb|EE065730.1|EE065730
genomic: CTAGGACTGATATCTCGACAGACGTGGATACAGATGATAAAGTTCAGAGGgtgatctctc ... tgatattcagTTTGAAAGGGGTCAACCTGCTTCCAATATGGCTTCTGATTCCAGCGACAGA
EST: AGATGATAAAGTTCAGAGG TTTGAAAGGGGTCAACCTGCTTCCAATATGGCTTCTGATTCCAGCGACAGAEST: gi|30301282|gb|CB978076.1|CB978076
genomic: AGATGATAAAGTTCAGAGGgtgatctctc ... tgatattcagTTTGAAAGGGGTCAACCTGCTTCCAATATGGCTTCTGATTCCAGCGACAGA
EST: CTAGGACTGATATCTCGACAGACGTGGATACAGATGATAAAGTTCAGAGG TTTGAAAGGGGTCAACCTGCTTCCAATATGGCTTCTGATTCCAGCGACGGAEST: gi|77583990|gb|DV221036.1|DV221036
genomic: CTAGGACTGATATCTCGACAGACGTGGATACAGATGATAAAGTTCAGAGGgtgatctctc ... tgatattcagTTTGAAAGGGGTCAACCTGCTTCCAATATGGCTTCTGATTCCAGCGACAGA
EST: CTAGGACTGATATCTCGACAGACGTGGATACAGATGATAAAGTTCAGAGG TTTGAAAGGGGTCAACCTGCTTCCAATATGGCTTCTGATTCCAGCGACAGAEST: gi|161706642|gb|FC056331.1|FC056331
genomic: CTAGGACTGATATCTCGACAGACGTGGATACAGATGATAAAGTTCAGAGGgtgatctctc ... tgatattcagTTTGAAAGGGGTCAACCTGCTTCCAATATGGCTTCTGATTCCAGCGACAGA
EST: CTAGGACTGATATCTCGACAGACGTGGATACAGATGATAAAGTTCAGAGG TTTGAAAGGGGTCAACCTGCTTCCAATATGGCTT
genomic: CTAGGACTGATATCTCGACAGACGTGGATACAGATGATAAAGTTCAGAGGgtgatctctc ... tgatattcagTTTGAAAGGGGTCAACCTGCTTCCAATATGGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGTGGTAGTGTAGAGAACTGGGGAGAGTCTGCAATGGCAGATGCCAGTCCTAGGACTGATATCTCGACAGACGTGGATACAGATGATAAAGTTCAGAGGgtgatctctctctctctctcaacatcttacatcctgcactgcattaattgagttatgttttgcatggtatatctatcaagacttgttcatatctctcagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc