1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CAAGGCTGATGTTTTCCATTTATTATCAGGCATGTGGAAAACACCTGCAGAGAGGTGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCTGAACTCCTAAAGgtatgacccttttaccattttgatggtttccttctgttggggtattcagaccctcaccctgacaaataataggaagacttcatctccatatccatttctt...
species | Vitis vinifera |
transcript | Vv13s0084g00660.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGAGGTGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCTGAACTCCTAAAG CTGCTTGTGAATCAGTTGGAGCCTCTGACCGAACAGCAACTGTTGGGCATCEST: gi|110358202|gb|EC922250.1|EC922250
genomic: AGAGGTGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCTGAACTCCTAAAGgtatgaccct ... tggtttgcagCTGCTTGTGAATCAGTTGGAGCCTCTGACCGAACAGCAACTGTTGGGCATC
EST: AGAGGTGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCTGAACTCCTAAAG CTGCTTGTGAATCAGTTGGAGCCTCTGACCGAACAGCAACTGTTGGGCATCEST: gi|110393937|gb|EC959530.1|EC959530
genomic: AGAGGTGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCTGAACTCCTAAAGgtatgaccct ... tggtttgcagCTGCTTGTGAATCAGTTGGAGCCTCTGACCGAACAGCAACTGTTGGGCATC
EST: AGAGGTGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCTGAACTCCTAAAG CTGCTTGTGAATCAGTTGGAGCCTCTGACCGAACAGCAACTGTTGGGCATCEST: gi|110687850|gb|EE065730.1|EE065730
genomic: AGAGGTGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCTGAACTCCTAAAGgtatgaccct ... tggtttgcagCTGCTTGTGAATCAGTTGGAGCCTCTGACCGAACAGCAACTGTTGGGCATC
EST: AGAGGTGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCTGAACTCCTAAAG CTGCTTGTGAATCAGTTGGAGCCTCTGACCGAACAGCAACTGTTGGGCATCEST: gi|110697733|gb|EE074978.1|EE074978
genomic: AGAGGTGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCTGAACTCCTAAAGgtatgaccct ... tggtttgcagCTGCTTGTGAATCAGTTGGAGCCTCTGACCGAACAGCAACTGTTGGGCATC
EST: AGAGGTGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCTGAACTCCTAAAG CTGCTTGTGAATCAGTTGGAGCCTCTGACCGAACAGCAACTGTTGGGCATCEST: gi|110360089|gb|EC922696.1|EC922696
genomic: AGAGGTGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCTGAACTCCTAAAGgtatgaccct ... tggtttgcagCTGCTTGTGAATCAGTTGGAGCCTCTGACCGAACAGCAACTGTTGGGCATC
EST: AGAGGTGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCTGAACTCCTAAAG CTGCTTGTGAATCAGTTGGAGCCTCTGACCGAACAGCAACTGTTGGGCATCEST: gi|110685242|gb|EE063437.1|EE063437
genomic: AGAGGTGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCTGAACTCCTAAAGgtatgaccct ... tggtttgcagCTGCTTGTGAATCAGTTGGAGCCTCTGACCGAACAGCAACTGTTGGGCATC
EST: AGAGGTGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCTGAACTCCTAAAG CTGCTTGTGAATCAGTTGGAGCCTCTGACCGAACAGCAACTGTTGGGCATCEST: gi|110383071|gb|EC947420.1|EC947420
genomic: AGAGGTGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCTGAACTCCTAAAGgtatgaccct ... tggtttgcagCTGCTTGTGAATCAGTTGGAGCCTCTGACCGAACAGCAACTGTTGGGCATC
EST: AGAGGTGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCTGAACTCCTAAAG CTGCTTGTGAATCAGTTGGAGCCTCTGACCGAACAGCAACTGTTGGGCATCEST: gi|18458746|gb|BM437024.1|BM437024
genomic: AGAGGTGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCTGAACTCCTAAAGgtatgaccct ... tggtttgcagCTGCTTGTGAATCAGTTGGAGCCTCTGACCGAACAGCAACTGTTGGGCATC
EST: AGAGGTGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCTGAACTCCTAAAG CTGCTTGTGAATCAGTTGGAGCCTCTGACCGAACAGCAACTGTTGGGCATCEST: gi|110428204|gb|EC994669.1|EC994669
genomic: AGAGGTGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCTGAACTCCTAAAGgtatgaccct ... tggtttgcagCTGCTTGTGAATCAGTTGGAGCCTCTGACCGAACAGCAACTGTTGGGCATC
EST: AGAGGTGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCTGAACTCCTAAAG CTGCTTGTGAATCAGTTGGAGCCTCTGACCGAACAGCAACTGTTGGGCATC
genomic: AGAGGTGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCTGAACTCCTAAAGgtatgaccct ... tggtttgcagCTGCTTGTGAATCAGTTGGAGCCTCTGACCGAACAGCAACTGTTGGGCATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGGCTGATGTTTTCCATTTATTATCAGGCATGTGGAAAACACCTGCAGAGAGGTGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCTGAACTCCTAAAGgtatgacccttttaccattttgatggtttccttctgttggggtattcagaccctcaccctgacaaataataggaagacttcatctccatatccatttctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaga