1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttggctttggtcatttcttggtttacccattgccttgtttattctgttggtttacacaaaatcattgtctttgtgaggtgtaagtagcttgtaatttaccatgctttatgtcctgtagGGTATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAATG
species | Vitis vinifera |
transcript | Vv13s0084g00660.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATGAAGCTGACCCCAACTAGAGCAGGAGCTCCAGCGAGCGCGACAGCCAG GGTATTTTTATTTCAAGCTCAGGAEST: gi|156737550|gb|EV241663.1|EV241663
genomic: ATGAAGCTGACCC-AACTAGAGCAGGAGCTCCAGCGAGCGCGACAGC-AGgttggctttg ... tgtcctgtagGGTATTTTTATTTCAAGCTCAGGA
EST: GGATGAAGCTGACCCAACTAGAGCAGGAGCTCCAGCGAGCGCGACAGCAG GGTATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAATEST: gi|110687850|gb|EE065730.1|EE065730
genomic: GGATGAAGCTGACCCAACTAGAGCAGGAGCTCCAGCGAGCGCGACAGCAGgttggctttg ... tgtcctgtagGGTATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAAT
EST: GGATGAAGCTGACCCAACTAGAGCAGGAGCTCCAGCGAGCGCGACAGCAG GGTATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAATEST: gi|30301282|gb|CB978076.1|CB978076
genomic: GGATGAAGCTGACCCAACTAGAGCAGGAGCTCCAGCGAGCGCGACAGCAGgttggctttg ... tgtcctgtagGGTATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAAT
EST: GGATGAAGCTGACCCAACTAGAGCAGGAGCTCCAGCGAGCGCGACAGCAG GGTATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAATEST: gi|110685242|gb|EE063437.1|EE063437
genomic: GGATGAAGCTGACCCAACTAGAGCAGGAGCTCCAGCGAGCGCGACAGCAGgttggctttg ... tgtcctgtagGGTATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAAT
EST: GGATGAAGCTGACCCAACTAGAGCAGGAGCTCCAGCGAGCGCGACAGCAG GGTATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAATEST: gi|77583990|gb|DV221036.1|DV221036
genomic: GGATGAAGCTGACCCAACTAGAGCAGGAGCTCCAGCGAGCGCGACAGCAGgttggctttg ... tgtcctgtagGGTATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAAT
EST: GGATGAAGCTGACCCAACTAGAGCAGGAGCTCCAGCGAGCGCGACAGCAG GGTATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAATEST: gi|110428204|gb|EC994669.1|EC994669
genomic: GGATGAAGCTGACCCAACTAGAGCAGGAGCTCCAGCGAGCGCGACAGCAGgttggctttg ... tgtcctgtagGGTATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAAT
EST: GGATGAAGCTGACCCAACTAGAGCAGGAGCTCCAGCGAGCGCGACAGCAG GGTATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAAT
genomic: GGATGAAGCTGACCCAACTAGAGCAGGAGCTCCAGCGAGCGCGACAGCAGgttggctttg ... tgtcctgtagGGTATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAAT
attgtctttgtgaggtgtaagtagcttgtaatttaccatgctttatgtcctgtagGGTATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAATG
ttgtaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggctttggtcatttcttggtttacccattgccttgtttattctgttggtttacacaaaatcattgtctttgtgaggtgtaagtagcttgtaatttaccatgctttatgtcctgtagGGTATTTTTATTTCAAGCTCAGGAGATCAAGCCCATTCAATGAGTGGAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA