1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctctctcttagatgagtagtatgaagatttggtgcctttttcttatttttgtataactgaaatttgtatgacttatcatctcgtgaagtaccgatttcagTTGTACAGAGGGGAACTCCATCCATTCTTATCGAGTTTCTGACTTTGGGACACTTGAGCAATCCATTGGGTTTCATTTAGAGGATGCTGTGGACCTGAGT
species | Vitis vinifera |
transcript | Vv13s0084g00660.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCAGCGGGATGCCGAGCTTCGATCCTCAATTACCTGTTTCGAATGCACT TTGTACAGAAGGGAACTCTATCCATTCTTATCGAGTTTCTGACTTTGGGACEST: gi|161709933|gb|FC058067.1|FC058067
genomic: GCCAGCGGGATGCCGAGCTTCGATCCTCAATTACCTGTTTCGAATGCACTgtaaatgcct ... ccgatttcagTTGTACAGAGGGGAACTCCATCCATTCTTATCGAGTTTCTGACTTTGGGAC
EST: GCCAGCGGGATGCCGAGCTTCGATCCTCAATTACCTGTTTCGAATGCACT TTGTACAGAGGGGAACTCCATCCATTCTTATCGAGTTTCTGACTTTGGGAC
genomic: GCCAGCGGGATGCCGAGCTTCGATCCTCAATTACCTGTTTCGAATGCACTgtaaatgcct ... ccgatttcagTTGTACAGAGGGGAACTCCATCCATTCTTATCGAGTTTCTGACTTTGGGAC
tttttgtataactgaaatttgtatgacttatcatctcgtgaagtaccgatttcagTTGTACAGAGGGGAACTCCATCCATTCTTATCGAGTTTCTGACTTTGGGACACTTGAGCAATCCATTGGGTTTCATTTAGAGGATGCTGTGGACCTGAGT
gtataac putative branch site (score: 3)
tataactgaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctctcttagatgagtagtatgaagatttggtgcctttttcttatttttgtataactgaaatttgtatgacttatcatctcgtgaagtaccgatttcagTTGTACAGAGGGGAACTCCATCCATTCTTATCGAGTTTCTGACTTTGGGACACTTGAGCAATCCATTGGGTTTCATTTAGAGGATGCTGTGGACCTGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
ctctctc
- - - - - - - - - - - - - - - - tgccttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - aactgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatctc