Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagagttccatttttttttttttggtggtttcaagttgtaaggtttctatttctgttatttatggaatcattttattggggtttttttggccctagactaattgcctatggttatgttttgtctttttaatttgccaaaagTCACAAAATTCATTTGATATAAATCCATCTGCTGCCCGGGTGGAGTCTCAGAGGTTGCCATTGCAAAAGGGTCAACAATCAAACCTGGTTTCTATATCTA

Basic information

species Vitis vinifera
transcript Vv13s0084g00660.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26257000|gb|CA808063.1|CA808063
EST:     GTGGTCGAGCAGTTACTTCTGATCCCCTCCATACTGTCACTTTTGATAAG                         TCACAAAATTCATTTGATATAAATCCAACTGCTGCCCGGGTGGAGTCTCAG
genomic: GTGGTCGAGCAGTTACTTCTGATCCCCTCCATAGTGTCACTTTTGATAAGgtagagttcc ... ttgccaaaagTCACAAAATTCATTTGATATAAATCCATCTGCTGCCCGGGTGGAGTCTCAG
EST: gi|30301282|gb|CB978076.1|CB978076
EST:     GTGGTCGAGCAGTTACTTCTGATCCCCTCCATACTGTCACTTTTGATAAG                         TCACAAAATTCATTTGATATAAATCCAACTGCTGCCCGGGTGGAGTCTCAG
genomic: GTGGTCGAGCAGTTACTTCTGATCCCCTCCATAGTGTCACTTTTGATAAGgtagagttcc ... ttgccaaaagTCACAAAATTCATTTGATATAAATCCATCTGCTGCCCGGGTGGAGTCTCAG
EST: gi|77583990|gb|DV221036.1|DV221036
EST:     GCAGTTACTTCTGATCCCCTCCATACTGTCACTTTTGATAAG                         TCACAAAATTCATTTGATATAAATCCAACTGCTGCCCGGGTGGAGTCTCAG
genomic: GCAGTTACTTCTGATCCCCTCCATAGTGTCACTTTTGATAAGgtagagttcc ... ttgccaaaagTCACAAAATTCATTTGATATAAATCCATCTGCTGCCCGGGTGGAGTCTCAG
EST: gi|161706642|gb|FC056331.1|FC056331
EST:     GTGGTCGAGCAGTTACTTCTGATCCCCTCCATAGTGTCACTTTTGATAAG                         TCACAAAATTCATTTGATATAAATCCATCTGCTGCCCGGGTGGAGTCTCAG
genomic: GTGGTCGAGCAGTTACTTCTGATCCCCTCCATAGTGTCACTTTTGATAAGgtagagttcc ... ttgccaaaagTCACAAAATTCATTTGATATAAATCCATCTGCTGCCCGGGTGGAGTCTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggccctagactaattgcctatggttatgttttgtctttttaatttgccaaaagTCACAAAATTCATTTGATATAAATCCATCTGCTGCCCGGGTGGAGTCTCAGAGGTTGCCATTGCAAAAGGGTCAACAATCAAACCTGGTTTCTATATCTA
                         ttatgttttgtctttt  TA-rich tract