Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACACCCCTAATTCTATTGAGCTTTCTTATTCTGACATGAAGTGTCTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTATgtaagtgtttgtggagaaggatgtgcatcatagactcatagtttcatgaaacaagggcattgttttaggagaaaaatatgtattcatcacggaaaacaat...

Basic information

species Oryza sativa
transcript LOC_Os06g29310.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g29310.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G351786_T01 (Zea mays), 5'ss of exon 8
-GGACACCCCTAATTCTATTGAGCTTTCTTATTCTGACATGAAGTGTCTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTATgtaagtgtttgtggagaaggatgtgcatcatagactcatagtttcatgaaacaagggcattgttttaggagaaaaatatgtattca-tcacggaaaacaat
 | |||||  |  |||| ||||| || ||| |  |||||| |  ||| |  |||||||||||||| |||||||||||||| ||||||| ||||| |||| ||   | ||           |||   |   | |  |  |||  |        |  | |     ||  || || ||   |||   | |   || ||| |
GGAACACCTTTG-TTCTGTTGAGATTGCTTCTGATGACATCAGATGTTTCCAGCCTGAATCATTGCTGTCCTCACCTATAATGAACTTTTACATCATgtgagcact-gttctcttttgcttgccaaaagcattggtttttttttatgttgctgagacttgagaagttgagaagtaataattggcttaacaaatacagt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88334047|gb|CI641098.1|CI641098
EST:     CTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTAT                         GTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCA
genomic: CTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTATgtaagtgttt ... atccatctagGTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCA
EST: gi|88331767|gb|CI640798.1|CI640798
EST:     CTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTAT                         GTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCA
genomic: CTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTATgtaagtgttt ... atccatctagGTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCA
EST: gi|33793431|gb|CF322595.1|CF322595
EST:     CTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTAT                         GTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCA
genomic: CTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTATgtaagtgttt ... atccatctagGTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCA
EST: gi|33794144|gb|CF322962.1|CF322962
EST:     CTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTAT                         GTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCA
genomic: CTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTATgtaagtgttt ... atccatctagGTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCA
EST: gi|88331768|gb|CI640799.1|CI640799
EST:     CTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTAT                         GTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCA
genomic: CTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTATgtaagtgttt ... atccatctagGTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCA
EST: gi|88573239|gb|CI664810.1|CI664810
EST:     CTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTAT                         GTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCA
genomic: CTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTATgtaagtgttt ... atccatctagGTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCA
EST: gi|88333541|gb|CI656613.1|CI656613
EST:     CTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTAT                         GTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCA
genomic: CTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTATgtaagtgttt ... atccatctagGTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCA