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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtctttgaactaacataattatttgagcttactctgttttatatacagttgatggttaattttgtttttctgttctctgcagGGACACCCCTAATTCTATTGAGCTTTCTTATTCTGACATGAAGTGTCTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTAT

Basic information

species Oryza sativa
transcript LOC_Os06g29310.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g29310.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G351786_T01 (Zea mays), 3'ss of exon 7
gttggtctttgaactaacataattatttgagcttactctgttttatatacagttgatggttaattttgtttttctgttctctgcagGGACACCCCTAATTCTATTGAGCTTTCTTATTCTGACATGAAGTGTCTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTAT
|||||   || | ||       || || || |||  | ||    | | |||||| || |  | |||| ||  |   || |   ||||||   || |  |||| ||||| || ||| |  |||||| |  ||| |  |||||||||||||| |||||||||||||| ||||||| ||||| ||
gttggcagttaatctggt----ttcttcgatcttcttttg----acacacagttcatcgcca-tttttttcctgccttattcacagGGAACACCTTTGTTCTGTTGAGATTGCTTCTGATGACATCAGATGTTTCCAGCCTGAATCATTGCTGTCCTCACCTATAATGAACTTTTACATCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88334047|gb|CI641098.1|CI641098
EST:     TGATGCAATGAAGATACACTATCCTTCATG                         GGACACCCCTAATTCTATTGAGCTTTCTTATTCTGACATGAAGTGTCTTGA
genomic: TGATGCAATGAAGATACACTATCCTTCATGgttggtcttt ... ttctctgcagGGACACCCCTAATTCTATTGAGCTTTCTTATTCTGACATGAAGTGTCTTGA
EST: gi|88331767|gb|CI640798.1|CI640798
EST:     TGATGCAATGAAGATACACTATCCTTCATG                         GGACACCCCTAATTCTATTGAGCTTTCTTATTCTGACATGAAGTGTCTTGA
genomic: TGATGCAATGAAGATACACTATCCTTCATGgttggtcttt ... ttctctgcagGGACACCCCTAATTCTATTGAGCTTTCTTATTCTGACATGAAGTGTCTTGA
EST: gi|33793431|gb|CF322595.1|CF322595
EST:     TGATGCAATGAAGATACACTATCCTTCATG                         GGACACCCCTAATTCTATTGAGCTTTCTTATTCTGACATGAAGTGTCTTGA
genomic: TGATGCAATGAAGATACACTATCCTTCATGgttggtcttt ... ttctctgcagGGACACCCCTAATTCTATTGAGCTTTCTTATTCTGACATGAAGTGTCTTGA
EST: gi|33794144|gb|CF322962.1|CF322962
EST:     TGATGCAATGAAGATACACTATCCTTCATG                         GGACACCCCTAATTCTATTGAGCTTTCTTATTCTGACATGAAGTGTCTTGA
genomic: TGATGCAATGAAGATACACTATCCTTCATGgttggtcttt ... ttctctgcagGGACACCCCTAATTCTATTGAGCTTTCTTATTCTGACATGAAGTGTCTTGA
EST: gi|88331768|gb|CI640799.1|CI640799
EST:     TGATGCAATGAAGATACACTATCCTTCATG                         GGACACCCCTAATTCTATTGAGCTTTCTTATTCTGACATGAAGTGTCTTGA
genomic: TGATGCAATGAAGATACACTATCCTTCATGgttggtcttt ... ttctctgcagGGACACCCCTAATTCTATTGAGCTTTCTTATTCTGACATGAAGTGTCTTGA
EST: gi|88573239|gb|CI664810.1|CI664810
EST:     TGATGCAATGAAGATACACTATCCTTCATG                         GGACACCCCTAATTCTATTGAGCTTTCTTATTCTGACATGAAGTGTCTTGA
genomic: TGATGCAATGAAGATACACTATCCTTCATGgttggtcttt ... ttctctgcagGGACACCCCTAATTCTATTGAGCTTTCTTATTCTGACATGAAGTGTCTTGA
EST: gi|88333541|gb|CI656613.1|CI656613
EST:     TGATGCAATGAAGATACACTATCCTTCATG                         GGACACCCCTAATTCTATTGAGCTTTCTTATTCTGACATGAAGTGTCTTGA
genomic: TGATGCAATGAAGATACACTATCCTTCATGgttggtcttt ... ttctctgcagGGACACCCCTAATTCTATTGAGCTTTCTTATTCTGACATGAAGTGTCTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttactctgttttatatacagttgatggttaattttgtttttctgttctctgcagGGACACCCCTAATTCTATTGAGCTTTCTTATTCTGACATGAAGTGTCTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTAT
                                ttttgtttttctgttc  CT-rich tract
                            ttaattttgtttttct  TA-rich tract