1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GCAGGCGTTGATGTATCTCATTTGGAAACAAGTGCATGCATTGGCGACCCAAAAACTTCAACAGATAATGAGGGGATCTTGTGTGAAGAGGAAGATTCCTgtaagtgtaaaccctctacgtctcaaaaggcatcatatgttgataggtcaacttatatggaaaatatag
species | Oryza sativa |
transcript | LOC_Os06g29310.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAAAACTTCAACAGATAATGAGGGGATCTTGTGTGAAGAGGAAGATTCCT ATGCTGCTGATGAEST: gi|58682667|gb|CK071354.1|CK071354
genomic: AAAAACTTCAACAGATAATGAGGGGATCTTGTGTGAAGAGGAAGATTCCTgtaagtgtaa ... gaaaatatagATGCTGCTGATGA
EST: AAAAACTTCAACAGATAATGAGGGGATCTTGTGTGAAGAGGAAGATTCCT ATGCTGCTGATGATGGCAAGGATAATGGCTACAGTAGGATATGCAAAGATGEST: gi|58661344|gb|CK050024.1|CK050024
genomic: AAAAACTTCAACAGATAATGAGGGGATCTTGTGTGAAGAGGAAGATTCCTgtaagtgtaa ... gaaaatatagATGCTGCTGATGATGGCAAGGATAATGGCTACAGTAGGATATGCAAAGATG
EST: AAAAACTTCAACAGATAATGAGGGGATCTTGTGTGAAGAGGAAGATTCCT ATGCTGCTGATGATGGCAAGGATAATGGCTACAGTAGGATATGCAAAGATGEST: gi|58656160|gb|CK044840.1|CK044840
genomic: AAAAACTTCAACAGATAATGAGGGGATCTTGTGTGAAGAGGAAGATTCCTgtaagtgtaa ... gaaaatatagATGCTGCTGATGATGGCAAGGATAATGGCTACAGTAGGATATGCAAAGATG
EST: AAAAACTTCAACAGATAATGAGGGGATCTTGTGTGAAGAGGAAGATTCCT ATGCTGCTGATGATGGCAAGGATAATGGCTACAGTAGGATATGCAAAGATG
genomic: AAAAACTTCAACAGATAATGAGGGGATCTTGTGTGAAGAGGAAGATTCCTgtaagtgtaa ... gaaaatatagATGCTGCTGATGATGGCAAGGATAATGGCTACAGTAGGATATGCAAAGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGGCGTTGATGTATCTCATTTGGAAACAAGTGCATGCATTGGCGACCCAAAAACTTCAACAGATAATGAGGGGATCTTGTGTGAAGAGGAAGATTCCTgtaagtgtaaaccctctacgtctcaaaaggcatcatatgttgataggtcaacttatatggaaaatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA