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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTGGGGGTATCGAGCGAAGGCTCAAGGACCGCGGGGCCAAGTTTCGCCGCTTGCTAGACGCCATCGTCCGCGAGATTGATCGCCGTAAGGCAGCAACGgtgagattcttcttctcttcttttttttttatgctgtaagttattttcttggtgtgcggtgaggggattaaagattcaatccttgcccggtgcgcttcaa...

Basic information

species Oryza sativa
transcript LOC_Os06g29310.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58607517|gb|CK035550.1|CK035550
EST:     GCTTGCTAGACGCCATCGTCCGCGAGATTGATCGCCGTAAGGCAGCAACG                         GATGATGACAAATGCGCAAGGGGTAGTTCAATCAGGGATGTGCAGAATCAT
genomic: GCTTGCTAGACGCCATCGTCCGCGAGATTGATCGCCGTAAGGCAGCAACGgtgagattct ... tctcttgcagGATGATGACAGATGCGCAAGGG-TAGTTCAATC-GGGATGTGCAGAATCAT
EST: gi|88423791|gb|CI609822.1|CI609822
EST:     GCTTGCTAGACGCCATCGTCCGCGAGATTGATCGCCGTAAGGCAGCAACG                         GATGATGACAGATGCGCAAGGGTAGTTCAATCGGGATGTGCAGAATCATCA
genomic: GCTTGCTAGACGCCATCGTCCGCGAGATTGATCGCCGTAAGGCAGCAACGgtgagattct ... tctcttgcagGATGATGACAGATGCGCAAGGGTAGTTCAATCGGGATGTGCAGAATCATCA
EST: gi|58682667|gb|CK071354.1|CK071354
EST:     GCTTGCTAGACGCCATCGTCCGCGAGATTGATCGCCGTAAGGCAGCAACG                         GATGATGACAAATGCGCAAGGGTAGTTCAATCAGGATGTGCAGAATCATCA
genomic: GCTTGCTAGACGCCATCGTCCGCGAGATTGATCGCCGTAAGGCAGCAACGgtgagattct ... tctcttgcagGATGATGACAGATGCGCAAGGGTAGTTCAATCGGGATGTGCAGAATCATCA
EST: gi|88444969|gb|CI589447.1|CI589447
EST:     GCTTGCTAGACGCCATCGTCCGCGAGATTGATCGCCGTAAGGCAGCAACG                         GATGATGACAGATGCGCAAGGGTAGTTCAATCGGGATGTGCAGAATCATCA
genomic: GCTTGCTAGACGCCATCGTCCGCGAGATTGATCGCCGTAAGGCAGCAACGgtgagattct ... tctcttgcagGATGATGACAGATGCGCAAGGGTAGTTCAATCGGGATGTGCAGAATCATCA
EST: gi|58661344|gb|CK050024.1|CK050024
EST:     GCTTGCTAGACGCCATCGTCCGCGAGATTGATCGCCGTAAGGCAGCAACG                         GATGATGACAAATGCGCAAGGGTAGTTCAATCAGGATGTGCAGAATCATCA
genomic: GCTTGCTAGACGCCATCGTCCGCGAGATTGATCGCCGTAAGGCAGCAACGgtgagattct ... tctcttgcagGATGATGACAGATGCGCAAGGGTAGTTCAATCGGGATGTGCAGAATCATCA
EST: gi|58656160|gb|CK044840.1|CK044840
EST:     GCTTGCTAGACGCCATCGTCCGCGAGATTGATCGCCGTAAGGCAGCAACG                         GATGATGACAAATGCGCAAGGGTAGTTCAATCAGGATGTGCAGAATCATCA
genomic: GCTTGCTAGACGCCATCGTCCGCGAGATTGATCGCCGTAAGGCAGCAACGgtgagattct ... tctcttgcagGATGATGACAGATGCGCAAGGGTAGTTCAATCGGGATGTGCAGAATCATCA