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...ttaacacttgattatttatacttttgttgtcttgcatgtgttaaaaatgaacttctgtctctttttttattaacaaaatcataaaatgaaatccatctagGTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCATATTTTCAATACATACTTCTTCAGCAAACTTGAAGCCTTGACATCAAAG
species | Oryza sativa |
transcript | LOC_Os06g29310.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTAT GTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCAEST: gi|88331767|gb|CI640798.1|CI640798
genomic: CTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTATgtaagtgttt ... atccatctagGTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCA
EST: CTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTAT GTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCAEST: gi|33793431|gb|CF322595.1|CF322595
genomic: CTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTATgtaagtgttt ... atccatctagGTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCA
EST: CTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTAT GTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCAEST: gi|33794144|gb|CF322962.1|CF322962
genomic: CTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTATgtaagtgttt ... atccatctagGTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCA
EST: CTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTAT GTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCAEST: gi|88331768|gb|CI640799.1|CI640799
genomic: CTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTATgtaagtgttt ... atccatctagGTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCA
EST: CTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTAT GTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCAEST: gi|88573239|gb|CI664810.1|CI664810
genomic: CTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTATgtaagtgttt ... atccatctagGTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCA
EST: CTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTAT GTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCAEST: gi|88333541|gb|CI656613.1|CI656613
genomic: CTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTATgtaagtgttt ... atccatctagGTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCA
EST: CTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTAT GTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCA
genomic: CTTGAGCCTGAATCATTGTTGTCCTCACCTATACTGAACTTCTACATTATgtaagtgttt ... atccatctagGTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCA
aatgaacttctgtctctttttttattaacaaaatcataaaatgaaatccatctagGTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCATATTTTCAATACATACTTCTTCAGCAAACTTGAAGCCTTGACATCAAAG
tattaac putative branch site (score: 1)
tccatct putative PPT
tctctttttttattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaacacttgattatttatacttttgttgtcttgcatgtgttaaaaatgaacttctgtctctttttttattaacaaaatcataaaatgaaatccatctagGTACCTAATGGGACAAATGCCATCGACAAGTAGGCTTGGAGGCAAGTATCATATTTTCAATACATACTTCTTCAGCAAACTTGAAGCCTTGACATCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC