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...tattatagatgtactcatcacagcttctagaactatctatgctagttagtttgctttaggttactctttttacaaagcttattctgatatttctattcagGTGGTTGAAGAGGTGGTTCTACTCGATGGAGATACTTGCATTTCAGACTCTGCAGAAAAAACATCCTCTGCATG
species | Oryza sativa |
transcript | LOC_Os06g29310.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GATTGCGATCAAGAAAG GTGGTTGAAGAGGTGGTTCTACTCGATGGAGATACTTGCATTTCAGACTCTEST: gi|88331767|gb|CI640798.1|CI640798
genomic: GATTGCGATCAAGAAAGgttagtatgt ... ttctattcagGTGGTTGAAGAGGTGGTTCTACTCGATGGAGATACTTGCATTTCAGACTCT
EST: GATTGCGATCAAGAAAG GTGGTTGAAGAGGTGGTTCTACTCGATGGAGATACTTGCATTTCAGACTCTEST: gi|33793431|gb|CF322595.1|CF322595
genomic: GATTGCGATCAAGAAAGgttagtatgt ... ttctattcagGTGGTTGAAGAGGTGGTTCTACTCGATGGAGATACTTGCATTTCAGACTCT
EST: GAATGGAGAATTTTCACCTACCTTTTCAATGCGATTGCGATCAAGAAAG GTGGTTGAAGAGGTGGTTCTACTCGATGGAGATACTTGCATTTCAGACTCTEST: gi|88331768|gb|CI640799.1|CI640799
genomic: GAATGGAGAATTTTCACCTACCTTTTCAATGCGATTGCGATCAAGAAAGgttagtatgt ... ttctattcagGTGGTTGAAGAGGTGGTTCTACTCGATGGAGATACTTGCATTTCAGACTCT
EST: GATTGCGATCAAGAAAG GTGGTTGAAGAGGTGGTTCTACTCGATGGAGATACTTGCATTTCAGACTCTEST: gi|88573239|gb|CI664810.1|CI664810
genomic: GATTGCGATCAAGAAAGgttagtatgt ... ttctattcagGTGGTTGAAGAGGTGGTTCTACTCGATGGAGATACTTGCATTTCAGACTCT
EST: GATTGCGATCAAGAAAG GTGGTTGAAGAGGTGGTTCTACTCGATGGAGATACTTGCATTTCAGACTCTEST: gi|58661344|gb|CK050024.1|CK050024
genomic: GATTGCGATCAAGAAAGgttagtatgt ... ttctattcagGTGGTTGAAGAGGTGGTTCTACTCGATGGAGATACTTGCATTTCAGACTCT
EST: GAATGGAGAATTTTCACCTACCTTTTCAATGCGATTGCGATCAAGAAAG GTGGTTGAAGAGGTGGTTCTACTCGATGGAGATACTTGCATTTCAGACTCTEST: gi|88333541|gb|CI656613.1|CI656613
genomic: GAATGGAGAATTTTCACCTACCTTTTCAATGCGATTGCGATCAAGAAAGgttagtatgt ... ttctattcagGTGGTTGAAGAGGTGGTTCTACTCGATGGAGATACTTGCATTTCAGACTCT
EST: GATTGCGATCAAGAAAG GTGGTTGAAGAGGTGGTTCTACTCGATGGAGATACTTGCATTTCAGACTCTEST: gi|58656160|gb|CK044840.1|CK044840
genomic: GATTGCGATCAAGAAAGgttagtatgt ... ttctattcagGTGGTTGAAGAGGTGGTTCTACTCGATGGAGATACTTGCATTTCAGACTCT
EST: GAATGGAGAATTTTCACCTACCTTTTCAATGCGATTGCGATCAAGAAAG GTGGTTGAAGAGGTGGTTCTACTCGATGGAGATACTTGCATTTCAGACTCT
genomic: GAATGGAGAATTTTCACCTACCTTTTCAATGCGATTGCGATCAAGAAAGgttagtatgt ... ttctattcagGTGGTTGAAGAGGTGGTTCTACTCGATGGAGATACTTGCATTTCAGACTCT
ttagtttgctttaggttactctttttacaaagcttattctgatatttctattcagGTGGTTGAAGAGGTGGTTCTACTCGATGGAGATACTTGCATTTCAGACTCTGCAGAAAAAACATCCTCTGCATG
ttctgat putative branch site (score: 3)
tttctattc CT-rich tract
ttattctgatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattatagatgtactcatcacagcttctagaactatctatgctagttagtttgctttaggttactctttttacaaagcttattctgatatttctattcagGTGGTTGAAGAGGTGGTTCTACTCGATGGAGATACTTGCATTTCAGACTCTGCAGAAAAAACATCCTCTGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG