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GATGATGACAGATGCGCAAGGGTAGTTCAATCGGGATGTGCAGAATCATCAGgtatgggattgatttgtgttaagatattggttgatttatggttggtagcatggatcatttatgactgggacttatagtacacgtgttctcgttcatgact...
species | Oryza sativa |
transcript | LOC_Os06g29310.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGACAAATGCGCAAGGGGTAGTTCAATCAGGGATGTGCAGAATCATCANG TTAAACAACAAGCAGTAACCATATCAGATTTTCGGTCCTCCTTTGGGATAEST: gi|88423791|gb|CI609822.1|CI609822
genomic: TGACAGATGCGCAAGGG-TAGTTCAATC-GGGATGTGCAGAATCATCA-Ggtatgggatt ... ttaatgtcagTTAAACAACAAGCAGTAACCATATCAGATTTTCGGTCCTCCTTTGGGATA
EST: TGATGACAGATGCGCAAGGGTAGTTCAATCGGGATGTGCAGAATCATCAG TTAAACAACAAGCAGTAACCATATCAGATTTTCGGTCCTCCTTTGGGATAGEST: gi|58682667|gb|CK071354.1|CK071354
genomic: TGATGACAGATGCGCAAGGGTAGTTCAATCGGGATGTGCAGAATCATCAGgtatgggatt ... ttaatgtcagTTAAACAACAAGCAGTAACCATATCAGATTTTCGGTCCTCCTTTGGGATAG
EST: TGATGACAAATGCGCAAGGGTAGTTCAATCAGGATGTGCAGAATCATCAG TTAAACAACAAGCAGTAACCATATCAGATTTTCGGTCCTCCTTTGGGATAGEST: gi|88444969|gb|CI589447.1|CI589447
genomic: TGATGACAGATGCGCAAGGGTAGTTCAATCGGGATGTGCAGAATCATCAGgtatgggatt ... ttaatgtcagTTAAACAACAAGCAGTAACCATATCAGATTTTCGGTCCTCCTTTGGGATAG
EST: TGATGACAGATGCGCAAGGGTAGTTCAATCGGGATGTGCAGAATCATCAG TTAAACAACAAGCAGTAACCATATCAGATTTTCGGTCCTCCTTTGGGATAGEST: gi|58661344|gb|CK050024.1|CK050024
genomic: TGATGACAGATGCGCAAGGGTAGTTCAATCGGGATGTGCAGAATCATCAGgtatgggatt ... ttaatgtcagTTAAACAACAAGCAGTAACCATATCAGATTTTCGGTCCTCCTTTGGGATAG
EST: TGATGACAAATGCGCAAGGGTAGTTCAATCAGGATGTGCAGAATCATCAG TTAAACAACAAGCAGTAACCATATCAGATTTTCGGTCCTCCTTTGGGATAGEST: gi|58656160|gb|CK044840.1|CK044840
genomic: TGATGACAGATGCGCAAGGGTAGTTCAATCGGGATGTGCAGAATCATCAGgtatgggatt ... ttaatgtcagTTAAACAACAAGCAGTAACCATATCAGATTTTCGGTCCTCCTTTGGGATAG
EST: TGATGACAAATGCGCAAGGGTAGTTCAATCAGGATGTGCAGAATCATCAG TTAAACAACAAGCAGTAACCATATCAGATTGGGGGTCCTCCTTTGGGATAG
genomic: TGATGACAGATGCGCAAGGGTAGTTCAATCGGGATGTGCAGAATCATCAGgtatgggatt ... ttaatgtcagTTAAACAACAAGCAGTAACCATATCAGATTTTCGGTCCTCCTTTGGGATAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGATGACAGATGCGCAAGGGTAGTTCAATCGGGATGTGCAGAATCATCAGgtatgggattgatttgtgttaagatattggttgatttatggttggtagcatggatcatttatgactgggacttatagtacacgtgttctcgttcatgact
- - - - CAGATG