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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cattagtattgttcagaacatcttgattctggctggtttgtttgttcttggtattttgttcctttaattatccttgcattcttcttccttttgttgccagGTTCCACAGCAGGACAATGAATACGATTGTGGTGTCTTTGTTCTGTACTATATGCGACGCTTTATCGAGGAAGCACCTGAAAGGCTTAACAACAAGGACT

Basic information

species Oryza sativa
transcript LOC_Os06g29310.2
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g29310.1 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM2G351786_T01 (Zea mays), 3'ss of exon 11
-------cattagtattgttcagaacatcttgat-tctggctggtttgtttgttcttggtattttgttcctttaattatccttgcattcttcttccttttgttgccagGTTCCACAGCAGGACAATGAATACGATTGTGGTGTCTTTGTTCTGTACTATATGCGACGCTTTATCGAGGAAGCACCTGAAAGGCTTAACAACAAGGACT
       ||||   |    ||| | |||| | |   ||       |  | | |  |  | ||||   || | ||  ||||| |      || ||   ||||||||||||| ||||||||| | ||||| |||||||||||  | ||||| |||||||||||||  || |||||  |||| || ||||||||| ||   || || ||||
tcttatacattgccacctatcaaagcatcctcacacctttgcaaataatatatcgtatggattt---tcatatagatatccct-----ttttttttctttgttgccagGTGCCACAGCAGCAAAATGATTACGATTGTGGCCTGTTTGTGCTGTACTATATGCAGCGGTTTATTCAGGAGGCGCCTGAAAGGTTTCGGAAGAAAGACT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttggtattttgttcctttaattatccttgcattcttcttccttttgttgccagGTTCCACAGCAGGACAATGAATACGATTGTGGTGTCTTTGTTCTGTACTATATGCGACGCTTTATCGAGGAAGCACCTGAAAGGCTTAACAACAAGGACT
                ctttaat  putative branch site (score: 4)
             ttcctttaattatcct  CT-rich tract
                 tttaattat  TA-rich tract