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...ggtattctagatgttgacttcatcagagttatgtctagttcatatattatttgataggcctataatattgaaattaattgaaggaatacattcttattagGTAAGGAGAAGGAGTTCTATTACTTTTATGATCAGTGCTTTGAGAGCAAGGAGGGCAA
species | Oryza sativa |
transcript | LOC_Os01g16970.3 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TAAGCTAAAACACGACTTTG GTAAGGAGAAGGAGTTCTATTACTTTTATGATCAGTGCTTTGAGAGCAAGGEST: gi|29614303|gb|CB619316.1|CB619316
genomic: TAAGCTAAAACACGACTTTGgtaagtcagt ... ttcttattagGTAAGGAGAAGGAGTTCTATTACTTTTATGATCAGTGCTTTGAGAGCAAGG
EST: GATTCAGTCTAGGATATCCACTCTGACAGATAAGCTAAAACACGACTTTG GTAAGGAGAAGGAGTTCTATTACTTTTATGATCAGTGCTTTGAGAGCAAGGEST: gi|29622278|gb|CB627289.1|CB627289
genomic: GATTCAGTCTAGGATATCCACTCTGACAGATAAGCTAAAACACGACTTTGgtaagtcagt ... ttcttattagGTAAGGAGAAGGAGTTCTATTACTTTTATGATCAGTGCTTTGAGAGCAAGG
EST: GATTCAGTCTAGGATATCCACTCTGACAGATAAGCTAAAACACGACTTTG GTAAGGAGAAGGAGTTCTATTACTTTTATGATCAGTGCTTTGAGAGCAAGGEST: gi|29627609|gb|CB632620.1|CB632620
genomic: GATTCAGTCTAGGATATCCACTCTGACAGATAAGCTAAAACACGACTTTGgtaagtcagt ... ttcttattagGTAAGGAGAAGGAGTTCTATTACTTTTATGATCAGTGCTTTGAGAGCAAGG
EST: GATTCAGTCTAGGATATCCACTCTGACAGATAAGCTAAAACACGACTTTG GTAAGGAGAAGGAGTTCTATTACTTTTATGATCAGTGCTTTGAGAGCAAGGEST: gi|88371457|gb|CI602635.1|CI602635
genomic: GATTCAGTCTAGGATATCCACTCTGACAGATAAGCTAAAACACGACTTTGgtaagtcagt ... ttcttattagGTAAGGAGAAGGAGTTCTATTACTTTTATGATCAGTGCTTTGAGAGCAAGG
EST: GATTCAGTCTAGGATATCCACTCTGACAGATAAGCTAAAACACGACTTTG GTAAGGAGAAGGAGTTCTATTACTTTTATGATCAGTGCTTTGAGAGCAAGGEST: gi|29627670|gb|CB632681.1|CB632681
genomic: GATTCAGTCTAGGATATCCACTCTGACAGATAAGCTAAAACACGACTTTGgtaagtcagt ... ttcttattagGTAAGGAGAAGGAGTTCTATTACTTTTATGATCAGTGCTTTGAGAGCAAGG
EST: GATTCAGTCTAGGATATCCACTCTGACAGATAAGCTAAAACACGACTTTG GTAAGGAGAAGGAGTTCTATTACTTTTATGATCAGTGCTTTGAGAGCAAGGEST: gi|58589761|gb|CF988069.1|CF988069
genomic: GATTCAGTCTAGGATATCCACTCTGACAGATAAGCTAAAACACGACTTTGgtaagtcagt ... ttcttattagGTAAGGAGAAGGAGTTCTATTACTTTTATGATCAGTGCTTTGAGAGCAAGG
EST: GATTCAGTCTAGGATATCCACTCTGACAGATAAGCTAAAACACGACTTTG GTAAGGAGAAGGAGTTCTATTACTTTTATGATCAGTGCTTTGAGAGCAAGGEST: gi|29627671|gb|CB632682.1|CB632682
genomic: GATTCAGTCTAGGATATCCACTCTGACAGATAAGCTAAAACACGACTTTGgtaagtcagt ... ttcttattagGTAAGGAGAAGGAGTTCTATTACTTTTATGATCAGTGCTTTGAGAGCAAGG
EST: GATTCAGTCTAGGATATCCACTCTGACAGATAAGCTAAAACACGACTTTG GTAAGGAGAAGGAGTTCTATTACTTTTATGATCAGTGCTTTGAGAGCAAGG
genomic: GATTCAGTCTAGGATATCCACTCTGACAGATAAGCTAAAACACGACTTTGgtaagtcagt ... ttcttattagGTAAGGAGAAGGAGTTCTATTACTTTTATGATCAGTGCTTTGAGAGCAAGG
attatttgataggcctataatattgaaattaattgaaggaatacattcttattagGTAAGGAGAAGGAGTTCTATTACTTTTATGATCAGTGCTTTGAGAGCAAGGAGGGCAA
aattaat putative branch site (score: 3)
ttcttatt putative PPT
tataatattgaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtattctagatgttgacttcatcagagttatgtctagttcatatattatttgataggcctataatattgaaattaattgaaggaatacattcttattagGTAAGGAGAAGGAGTTCTATTACTTTTATGATCAGTGCTTTGAGAGCAAGGAGGGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG