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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctcaccctctggctaatttgttctgttctttctttttcccaatataggttgaagcttacggaattgtgctaatgtaacag

Basic information

species Oryza sativa
transcript LOC_Os01g16970.3
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33679534|gb|CF307773.1|CF307773
EST:     ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|33679492|gb|CF307731.1|CF307731
EST:     ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|29627610|gb|CB632621.1|CB632621
EST:     ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCGAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|86489801|gb|CI132434.1|CI132434
EST:     ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|88511531|gb|CI439037.1|CI439037
EST:     ATGTGGCTGTATTATCGACTCCAGCNCTTTGCNATGAACAAAAACTTAAG                         GAATTGGAACANAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|86901330|gb|CI326173.1|CI326173
EST:     ACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|88262324|gb|CI366098.1|CI366098
EST:     ATGTGGCTTTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|33681972|gb|CF310211.1|CF310211
EST:     ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|33679522|gb|CF307761.1|CF307761
EST:     ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|33679756|gb|CF307995.1|CF307995
EST:     ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|29614303|gb|CB619316.1|CB619316
EST:     ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCGAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|218491672|gb|FG963178.1|FG963178
EST:     ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCGAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|33679967|gb|CF308206.1|CF308206
EST:     ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|88318978|gb|CI510773.1|CI510773
EST:     CTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: CTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|33679350|gb|CF307589.1|CF307589
EST:     ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|29622278|gb|CB627289.1|CB627289
EST:     ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCGAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|33679589|gb|CF307828.1|CF307828
EST:     ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|29627609|gb|CB632620.1|CB632620
EST:     ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCGAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|88833732|gb|CI077213.1|CI077213
EST:     GACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: GACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|88379159|gb|CI508677.1|CI508677
EST:     GGCTGTATTATCGACTCCAGGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTTGAACAGAAGCTCAAGGCATTTTCGAACCAGCGTGACCATGATGAA
genomic: GGCTGTATTATCGACTCCA-GCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|86535010|gb|CI175216.1|CI175216
EST:     ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAGGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|88518920|gb|CI446574.1|CI446574
EST:     GATGAAC-AAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: GATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|88274029|gb|CI394435.1|CI394435
EST:     ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         G-ATT-GAACAGAAGCTC-AGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|86535807|gb|CI176013.1|CI176013
EST:     ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|33679903|gb|CF308142.1|CF308142
EST:     ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|88470990|gb|CI408261.1|CI408261
EST:     GCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: GCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|33679526|gb|CF307765.1|CF307765
EST:     ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|89172732|gb|CI022611.1|CI022611
EST:     ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|33677422|gb|CF305661.1|CF305661
EST:     ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|88268545|gb|CI378480.1|CI378480
EST:     ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|88966807|gb|CI366030.1|CI366030
EST:     TGGGGCTGTATTATCGACTCCAGCGCTTTTCGATGAACAAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: TGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAAC-AAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|33680003|gb|CF308242.1|CF308242
EST:     ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|29627670|gb|CB632681.1|CB632681
EST:     ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCGAGGCATCTTTGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|163925902|gb|EG709650.1|EG709650
EST:     ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|86882709|gb|CI327358.1|CI327358
EST:     TATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: TATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|88903554|gb|CI089092.1|CI089092
EST:     ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|88533801|gb|CI460467.1|CI460467
EST:     TGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: TGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|88484206|gb|CI421477.1|CI421477
EST:     AAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: AAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|88517473|gb|CI445127.1|CI445127
EST:     GATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: GATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|88978421|gb|CI384803.1|CI384803
EST:     AGCGCTTTGCGATGAACAAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: AGCGCTTTGCGATGAAC-AAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|33679947|gb|CF308186.1|CF308186
EST:     ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|29627671|gb|CB632682.1|CB632682
EST:     ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCGAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: ATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
EST: gi|88292799|gb|CI505378.1|CI505378
EST:     CTTTGCGATGAACAAAAACTGAAG                         GAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA
genomic: CTTTGCGATGAACAAAAACTGAAGgttctttctc ... aatgtaacagGAATTGGAACAGAAGCTCAAGGCATCTTCGAACCAGCGTGACCATGATGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATGTGGCTGTATTATCGACTCCAGCGCTTTGCGATGAACAAAAACTGAAGgttctttctcaccctctggctaatttgttctgttctttctttttcccaatataggttgaagcttacggaattgtgctaatgtaacag

- - - - - - - - - - - - - - - - - - - - - - - CTGAAG