1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ATTCAAAAGGCAAAAGTGGCATTTGCTAAAGACGAGGCAGAGCTAGCGAAACTGAAGGGTGAAGAGAAAATACTACAAGGCCTTGTTGACAAGCTCACAGgtgtgctcttcgtggcggtttgtcttgagtcatttaccaaagaatgttatgttgggaaatgctgttggcgctgctaattttcaatggatagtttattttgtgttaaactatgacttctcatgttgtgcag
species | Oryza sativa |
transcript | LOC_Os01g16970.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACTGAAGGGTGAAGAGAAAATACTACA-GGCCTTGTTGACA-GCTCACAG AACAAA-GAAATTGATAGAGAAGGCAGAGGAAGAG-A-CGCTTAAGAAAAEST: gi|86423164|gb|CI060737.1|CI060737
genomic: ACTGAAGGGTGAAGAGAAAATACTACAAGGCCTTGTTGACAAGCTCACAGgtgtgctctt ... tgttgtgcagAACAAAAGAAATTGATAGAGAAGGCAGAGGAAGAGGAACGCTTAAGAAAA
EST: ACTGAAGGGTGAAGAGAAAATACTACAAGGCCTTGTTGACAAGCTCACAG AACAAAAGAAATTGATAGAGAAGGCAGAGGAAGAG-A-CGCTTAAGAAAAGEST: gi|88212111|gb|CI211751.1|CI211751
genomic: ACTGAAGGGTGAAGAGAAAATACTACAAGGCCTTGTTGACAAGCTCACAGgtgtgctctt ... tgttgtgcagAACAAAAGAAATTGATAGAGAAGGCAGAGGAAGAGGAACGCTTAAGAAAAG
EST: ACTGAAGGGTGAAGAGAAAATACTACAAGGCCTTGTTGACGAGCTCACAG AACAAAAGAAATTGATAGAGAAGGCAGAGGAAGAGGAACGCTTAAGAAAAEST: gi|88903472|gb|CI089010.1|CI089010
genomic: ACTGAAGGGTGAAGAGAAAATACTACAAGGCCTTGTTGACAAGCTCACAGgtgtgctctt ... tgttgtgcagAACAAAAGAAATTGATAGAGAAGGCAGAGGAAGAGGAACGCTTAAGAAAA
EST: ACTGAAGGGTGAAGAGAAAATACTACAAGGCCTTGTTGACAAGCTCACAG AACAAAAGAAATTGATAGAGAAGGCAGAGGAAGAGGAACGCTTAAGAAAA
genomic: ACTGAAGGGTGAAGAGAAAATACTACAAGGCCTTGTTGACAAGCTCACAGgtgtgctctt ... tgttgtgcagAACAAAAGAAATTGATAGAGAAGGCAGAGGAAGAGGAACGCTTAAGAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCAAAAGGCAAAAGTGGCATTTGCTAAAGACGAGGCAGAGCTAGCGAAACTGAAGGGTGAAGAGAAAATACTACAAGGCCTTGTTGACAAGCTCACAGgtgtgctcttcgtggcggtttgtcttgagtcatttaccaaagaatgttatgttgggaaatgctgttggcgctgctaattttcaatggatagtttattttgtgttaaactatgacttctcatgttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA