1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaagaggattataatcggtggccattctctgtatcattcaaatgtaaacacagtaaatgtacacaaaatcaattgtaaggctagagattagggtgcttttgttccgtaaacatagtgcttgagggaattcccgctatatttttttctaattacccatatgtgtttgtcgctgcctcttagATTGCTGCGACGGGAGTGATGAGTATGATAGCAATGTCACTTGCAAGAATACGTGCTGGGAGGCTGGTAAAGCGGCAAGGGATAAATTGAAGAAAAAAGT
species | Oryza sativa |
transcript | LOC_Os01g16970.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCATTCTCCCATCACGATCTTCTCGTCGCGAGTGAATGATGGTATCTGTG ATTGCTGCGACGGGAGTGATGAGTATGATAGCAATGTCACTTGCAAGAATAEST: gi|86423164|gb|CI060737.1|CI060737
genomic: GCATTCTCCCATCACGATCTTCTCGTCGCGAGTGAATGATGGTATCTGTGgtaagaggat ... tgcctcttagATTGCTGCGACGGGAGTGATGAGTATGATAGCAATGTCACTTGCAAGAATA
EST: GCATTCTCCCATCACGATCTTCTCGTCGCGAGTGAATGATGGTATCTGTG ATTGCTGCGACGGGAGTGATGAGTATGATAGCAATGTCACTTGCAAGAATAEST: gi|88212111|gb|CI211751.1|CI211751
genomic: GCATTCTCCCATCACGATCTTCTCGTCGCGAGTGAATGATGGTATCTGTGgtaagaggat ... tgcctcttagATTGCTGCGACGGGAGTGATGAGTATGATAGCAATGTCACTTGCAAGAATA
EST: GCATTCTCCCATCACGATCTTCTCGTCGCGAGTGAATGATGGTATCTGTG ATTGCTGCGACGGGAGTGATGAGTATGATAGCAATGTCACTTGCAAGAATAEST: gi|88903472|gb|CI089010.1|CI089010
genomic: GCATTCTCCCATCACGATCTTCTCGTCGCGAGTGAATGATGGTATCTGTGgtaagaggat ... tgcctcttagATTGCTGCGACGGGAGTGATGAGTATGATAGCAATGTCACTTGCAAGAATA
EST: GCATTCTCCCATCACGATCTTCTCGTCGCGAGTGAATGATGGTATCTGTG ATTGCTGCGACGGGAGTGATGAGTATGATAGCAATGTCACTTGCAAGAATA
genomic: GCATTCTCCCATCACGATCTTCTCGTCGCGAGTGAATGATGGTATCTGTGgtaagaggat ... tgcctcttagATTGCTGCGACGGGAGTGATGAGTATGATAGCAATGTCACTTGCAAGAATA
aattcccgctatatttttttctaattacccatatgtgtttgtcgctgcctcttagATTGCTGCGACGGGAGTGATGAGTATGATAGCAATGTCACTTGCAAGAATACGTGCTGGGAGGCTGGTAAAGCGGCAAGGGATAAATTGAAGAAAAAAGT
ttctaat putative branch site (score: 2)
ctgcctctt putative PPT
tatatttttttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaggattataatcggtggccattctctgtatcattcaaatgtaaacacagtaaatgtacacaaaatcaattgtaaggctagagattagggtgcttttgttccgtaaacatagtgcttgagggaattcccgctatatttttttctaattacccatatgtgtttgtcgctgcctcttagATTGCTGCGACGGGAGTGATGAGTATGATAGCAATGTCACTTGCAAGAATACGTGCTGGGAGGCTGGTAAAGCGGCAAGGGATAAATTGAAGAAAAAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA