1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTATGTTTACAAGGTATGTCCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGGgtatgtttgttagcctcctttcaggtgtactaagttttcattattattgctctgcagatgtctagttcagtttttcctaataatgggttataccactttg...
species | Oryza sativa |
transcript | LOC_Os01g16970.3 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGG GCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGGEST: gi|33679492|gb|CF307731.1|CF307731
genomic: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGGgtatgtttgt ... ctgctgtcagGCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGG
EST: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGG GCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGGEST: gi|29627610|gb|CB632621.1|CB632621
genomic: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGGgtatgtttgt ... ctgctgtcagGCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGG
EST: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGG GCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGGEST: gi|33679522|gb|CF307761.1|CF307761
genomic: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGGgtatgtttgt ... ctgctgtcagGCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGG
EST: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGG GCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGGEST: gi|33679756|gb|CF307995.1|CF307995
genomic: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGGgtatgtttgt ... ctgctgtcagGCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGG
EST: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGG GCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGGEST: gi|29614303|gb|CB619316.1|CB619316
genomic: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGGgtatgtttgt ... ctgctgtcagGCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGG
EST: CCGTTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGG GCGCTGGGAAAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGGEST: gi|33679967|gb|CF308206.1|CF308206
genomic: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGGgtatgtttgt ... ctgctgtcagGCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGG
EST: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGG GCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGGEST: gi|33679350|gb|CF307589.1|CF307589
genomic: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGGgtatgtttgt ... ctgctgtcagGCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGG
EST: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGG GCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGGEST: gi|29622278|gb|CB627289.1|CB627289
genomic: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGGgtatgtttgt ... ctgctgtcagGCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGG
EST: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGG GCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGGEST: gi|33679589|gb|CF307828.1|CF307828
genomic: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGGgtatgtttgt ... ctgctgtcagGCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGG
EST: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGG GCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGGEST: gi|29627609|gb|CB632620.1|CB632620
genomic: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGGgtatgtttgt ... ctgctgtcagGCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGG
EST: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGG GCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGGEST: gi|88371457|gb|CI602635.1|CI602635
genomic: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGGgtatgtttgt ... ctgctgtcagGCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGG
EST: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGG GCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGGEST: gi|33679903|gb|CF308142.1|CF308142
genomic: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGGgtatgtttgt ... ctgctgtcagGCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGG
EST: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGG GCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGGEST: gi|33679526|gb|CF307765.1|CF307765
genomic: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGGgtatgtttgt ... ctgctgtcagGCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGG
EST: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGG GCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGGEST: gi|33680003|gb|CF308242.1|CF308242
genomic: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGGgtatgtttgt ... ctgctgtcagGCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGG
EST: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGG GCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGGEST: gi|29627670|gb|CB632681.1|CB632681
genomic: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGGgtatgtttgt ... ctgctgtcagGCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGG
EST: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGG GCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGGEST: gi|163925902|gb|EG709650.1|EG709650
genomic: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGGgtatgtttgt ... ctgctgtcagGCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGG
EST: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGG GCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGGEST: gi|58589761|gb|CF988069.1|CF988069
genomic: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGGgtatgtttgt ... ctgctgtcagGCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGG
EST: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGG GCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAEST: gi|33679947|gb|CF308186.1|CF308186
genomic: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGGgtatgtttgt ... ctgctgtcagGCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCA
EST: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGG GCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGGEST: gi|29627671|gb|CB632682.1|CB632682
genomic: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGGgtatgtttgt ... ctgctgtcagGCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGG
EST: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGG GCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGG
genomic: CCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGGgtatgtttgt ... ctgctgtcagGCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATGTTTACAAGGTATGTCCATTCAAGAAAGCTTCGCAGGTTGAAGGACATAGTACCACCAGCCTGGGgtatgtttgttagcctcctttcaggtgtactaagttttcattattattgctctgcagatgtctagttcagtttttcctaataatgggttataccactttg
- - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - TTGAAG