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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTTCTCACATGAATCAGATGATGAATATGTCGATGATCATGATGAGCATGTTGCGTCATACAAGTCTGATGATGATCAGAAAGGTGATGACCATTCAGgtatatggttcatgtaacctgcccactatctctcttctttgactcctttctgtatttggttatcgatttttcttttttcttttgttctgtcag

Basic information

species Oryza sativa
transcript LOC_Os01g16970.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g16970.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G052875_T02 (Zea mays), 5'ss of exon 8
---------------GACTTCTCACATGAATCAGATGATGAATATGTCGATGATCATGATGAGCATGTTGCGTCATACAAGTCTGATGATGATCAGAAAGGTGATGACCATTCAGgtatatggttcatgtaacctgcccactatctctcttctttgactcctttctgtatttggttatcgatttttcttttttcttttgttctgtcag
               || ||    ||||| ||||| ||||||||||| ||||| |||||||||||||||| ||| || || ||||||||||| |||||||||||| ||||||||| ||      | |  | || | |    | |     || | ||| ||   | |||   || ||||    | |||                     
AAATATGAAGATGAAGAGTTTGATCATGAGTCAGAAGATGAATATGTTGATGACCATGATGAGCATGTTGAGTCCTATAAATCTGATGATGACCAGAAAGgtgatcaccattcagcta-----gtgacatgac-tacttcttgttctgtttatgtgattctgatttgttaatgtttatttgctattccag------------------

upper sequence: LOC_Os01g16970.3 (Oryza sativa), 5'ss of exon 7
lower sequence: AC213600.3_FGT002 (Zea mays), 5'ss of exon 8
---------------GACTTCTCACATGAATCAGATGATGAATATGTCGATGATCATGATGAGCATGTTGCGTCATACAAGTCTGATGATGATCAGAAAGGTGATGACCATTCAGgtatatggttcatgtaacctgcccactatctctcttctttgactcctttctgtatttggtt-atcgatttttcttttttcttttgttctgtcag
               || || |  ||||| ||||| ||||||||||| || || |||||||||||||||| ||| ||||| ||||||||||| || |||||| || |||||||| |||         |||||  || | |||| ||    || |||  |  ||| |||  ||| || ||  || ||  |||  | |||           
AAATATGAAGATGAAGAGTTTTATCATGAGTCAGAAGATGAATATGTTGACGACCATGATGAGCATGTTGAGTCCTACAAATCTGATGATGACCAAAAAGgttatcaccattcatgta--------gtgtaatatggc-acta-ctactatccttgttttgtttatgtgattgatttattaatattggtttgctatttcag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58589761|gb|CF988069.1|CF988069
EST:     TGTTGCGTCATACAAGTCTGATGATGATCAGAAAGGTGATGACCATTCAG                         ATTTCACTGCCTCTGGGCAAGCATCATGGCTGGATAAAGTTCAGCAAACTG
genomic: TGTTGCGTCATACAAGTCTGATGATGATCAGAAAGGTGATGACCATTCAGgtatatggtt ... gttctgtcagATTTCACTGCCTCTGGGCAAGCATCATGGCTGGATAAAATTCAGCAAACTG