1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGGGTTACTGATGCTGACCTCAGAGCATTGGTATCAGATGAAGTTTTTCAAGCAGAGCCTGTCTGGAAACTTGGTGATTTGCAGgtaaattgatattttggattttgctatcatggcttgacaataatagaacaaacataagccaatcaatatctatctggtgcag
species | Glycine max |
transcript | GLYMA20G38950.3 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CAGATGAAGTTTTTCAAGCAGAGCCTGTCTGGAAACTTGGTGATTTGCAG GTGACTTGTGGAACTCTTGGCCTTTCTACAGCAACTGTCAAACTTTTGAGTEST: gi|192298527|gb|FG988498.1|FG988498
genomic: CAGATGAAGTTTTTCAAGCAGAGCCTGTCTGGAAACTTGGTGATTTGCAGgtaaattgat ... tctggtgcagGTGACTTGTGGAACTCTTGGCCTTTCTACAGCAACTGTCAAACTTTTGAGT
EST: CAGATGAAGTTTTTCAAGCAGAGCCTGTCTGGAAACTTGGTGATTTGCAG GTGACTTGTGGAACTCTTGGCCTTTCTACAGCAACTGTCAAACTTTTGAGTEST: gi|192305633|gb|FG994343.1|FG994343
genomic: CAGATGAAGTTTTTCAAGCAGAGCCTGTCTGGAAACTTGGTGATTTGCAGgtaaattgat ... tctggtgcagGTGACTTGTGGAACTCTTGGCCTTTCTACAGCAACTGTCAAACTTTTGAGT
EST: CAGATGAAGTTTTTCAAGCAGAGCCTGTCTGGAAACTTGGTGATTTGCAG GTGACTTGTGGAACTCTTGGCCTTTCTACAGCAACTGTCAAACTTTTGAGTEST: gi|207733383|gb|GD713223.1|GD713223
genomic: CAGATGAAGTTTTTCAAGCAGAGCCTGTCTGGAAACTTGGTGATTTGCAGgtaaattgat ... tctggtgcagGTGACTTGTGGAACTCTTGGCCTTTCTACAGCAACTGTCAAACTTTTGAGT
EST: GCAGAGCCTGTTCTTGGTAAACTTGGTGATTTGCAG GTGACTTGTGGAACTCTTGGCCTTTCTACAGCAACTGTCAAACTTTTGAGTEST: gi|4313425|gb|AI460544.1|AI460544
genomic: GCAGAGCCTG-TC-TGG-AAACTTGGTGATTTGCAGgtaaattgat ... tctggtgcagGTGACTTGTGGAACTCTTGGCCTTTCTACAGCAACTGTCAAACTTTTGAGT
EST: GGAAACTTGGTGATTTGCAG GTGACTTGTGGAACTCTTGGCCTTTCTACAGCAACTGTCAAACTTTTGAGT
genomic: GGAAACTTGGTGATTTGCAGgtaaattgat ... tctggtgcagGTGACTTGTGGAACTCTTGGCCTTTCTACAGCAACTGTCAAACTTTTGAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGTTACTGATGCTGACCTCAGAGCATTGGTATCAGATGAAGTTTTTCAAGCAGAGCCTGTCTGGAAACTTGGTGATTTGCAGgtaaattgatattttggattttgctatcatggcttgacaataatagaacaaacataagccaatcaatatctatctggtgcag
- - - - - - - - - - - - - - - - - CAGATG