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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtttcctgatttcccttgtacttttaattgaattatactggaattgttatcactattggtatgatggaggaatcttgtactcttattatttttttgcagGAGCCAGTAACACTTCTTGAGTACTCAATGAATGCAGTCACGGAAGGCATCGATGCAATTGCCACTACCCGGGTTGTGATTCGTGGGGAGAGTGAAACAA

Basic information

species Glycine max
transcript GLYMA20G38950.3
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17400497|gb|BM177279.1|BM177279
EST:     GTACAGGACCAGTGGATTCGGCATACAAGGCTGTGGATCTGATTGTGAAG                         GAGCCAGTAACACTTCTTGAGTACTCAATGAATGCAGTCACGGAAGGCATC
genomic: GTACAGGACCAGTGGATTCGGCATACAAGGCTGTGGATCTGATTGTGAAGgtttgaagtt ... ttttttgcagGAGCCAGTAACACTTCTTGAGTACTCAATGAATGCAGTCACGGAAGGCATC
EST: gi|192298527|gb|FG988498.1|FG988498
EST:     GTACAGGACCAGTGGATTCGGCATACAAGGCTGTGGATCTGATTGTGAAG                         GAGCCAGTAACACTTCTTGAGTACTCAATGAATGCAGTCACGGAAGGCATC
genomic: GTACAGGACCAGTGGATTCGGCATACAAGGCTGTGGATCTGATTGTGAAGgtttgaagtt ... ttttttgcagGAGCCAGTAACACTTCTTGAGTACTCAATGAATGCAGTCACGGAAGGCATC
EST: gi|192305633|gb|FG994343.1|FG994343
EST:     GTACAGGACCAGTGGATTCGGCATACAAGGCTGTGGATCTGATTGTGAAG                         GAGCCAGTAACACTTCTTGAGTACTCAATGAATGCAGTCACGGAAGGCATC
genomic: GTACAGGACCAGTGGATTCGGCATACAAGGCTGTGGATCTGATTGTGAAGgtttgaagtt ... ttttttgcagGAGCCAGTAACACTTCTTGAGTACTCAATGAATGCAGTCACGGAAGGCATC
EST: gi|207733383|gb|GD713223.1|GD713223
EST:     GTACAGGACCAGTGGATTCGGCATACAAGGCTGTGGATCTGATTGTGAAG                         GAGCCAGTAACACTTCTTGAGTACTCAATGAATGCAGTCACGGAAGGCATC
genomic: GTACAGGACCAGTGGATTCGGCATACAAGGCTGTGGATCTGATTGTGAAGgtttgaagtt ... ttttttgcagGAGCCAGTAACACTTCTTGAGTACTCAATGAATGCAGTCACGGAAGGCATC
EST: gi|4313425|gb|AI460544.1|AI460544
EST:     GTACAGGACCAGTGGATTCGGCATACAAGGCTGTGGATCTGATTGTGAAG                         GAGCCAGTAACACTTCTTGAGTACTCAATGAATGCAGTCACGGAAGGCATC
genomic: GTACAGGACCAGTGGATTCGGCATACAAGGCTGTGGATCTGATTGTGAAGgtttgaagtt ... ttttttgcagGAGCCAGTAACACTTCTTGAGTACTCAATGAATGCAGTCACGGAAGGCATC
EST: gi|19053418|gb|BM732085.1|BM732085
EST:     GTACAGGACCAGTGGATTCGGCATACAAGGCTGTGGATCTGATTGTGAAG                         GAGCCAGTAACACTTCTTGAGTACTCAATGAATGCAGTCACGGAAGGCATC
genomic: GTACAGGACCAGTGGATTCGGCATACAAGGCTGTGGATCTGATTGTGAAGgtttgaagtt ... ttttttgcagGAGCCAGTAACACTTCTTGAGTACTCAATGAATGCAGTCACGGAAGGCATC
EST: gi|208097892|gb|GD893445.1|GD893445
EST:     GTACAGGACCAGTGGATTCGGCATACAAGGCTGTGGATCTGATTGTGAAG                         GAGCCAGTAACACTTCTTGAGTACTCAATGAATGCAGTCACGGAAGGCATC
genomic: GTACAGGACCAGTGGATTCGGCATACAAGGCTGTGGATCTGATTGTGAAGgtttgaagtt ... ttttttgcagGAGCCAGTAACACTTCTTGAGTACTCAATGAATGCAGTCACGGAAGGCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttatcactattggtatgatggaggaatcttgtactcttattatttttttgcagGAGCCAGTAACACTTCTTGAGTACTCAATGAATGCAGTCACGGAAGGCATCGATGCAATTGCCACTACCCGGGTTGTGATTCGTGGGGAGAGTGAAACAA
                                   ctcttattattttttt  CT-rich tract
                              ttgtactcttattatt  TA-rich tract