1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGGACGCCATGCTTTGAGAAAGCGACTTGAAGAGgtatgcatacgaatatttgaattgaaacaataggcttattgaatttctcttctgttttatgagttattctctgtttttccag
species | Glycine max |
transcript | GLYMA20G38950.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGGACGCCATGCTTTGAGAAAGCGACTTGAAGAG CTTGGTTATGAACTTAGTGACGACCAAGTTCAGACTTTATTTTGGCGTTTTEST: gi|192305633|gb|FG994343.1|FG994343
genomic: TGGACGCCATGCTTTGAGAAAGCGACTTGAAGAGgtatgcatac ... gtttttccagCTTGGTTATGAACTTAGTGACGACCAAGTTCAGACTTTATTTTGGCGTTTT
EST: GGACGCCATGCTTTGAGAAAGCGACTTGAAGAG CTTGGTTATGAACTTAGCGACGACCAAGTTCAGACTTTATTTTGGCGTTTTEST: gi|192324295|gb|FK018271.1|FK018271
genomic: GGACGCCATGCTTTGAGAAAGCGACTTGAAGAGgtatgcatac ... gtttttccagCTTGGTTATGAACTTAGTGACGACCAAGTTCAGACTTTATTTTGGCGTTTT
EST: TGGACGCCATGCTTTGAGAAAGCGACTTGAAGAG CTTGGTTATGAACTTAGTGACGACCAAGTTCAGACTTTATTTTGGCGTTTT
genomic: TGGACGCCATGCTTTGAGAAAGCGACTTGAAGAGgtatgcatac ... gtttttccagCTTGGTTATGAACTTAGTGACGACCAAGTTCAGACTTTATTTTGGCGTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGACGCCATGCTTTGAGAAAGCGACTTGAAGAGgtatgcatacgaatatttgaattgaaacaataggcttattgaatttctcttctgttttatgagttattctctgtttttccag
- - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - TGAAGA