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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGGTTATGAACTTAGTGACGACCAAGTTCAGACTTTATTTTGGCGTTTTAAAGCAGTGGCTGAGCAAAAAAAGgtaaatcagaactagtgttgctggtagtattatgtaagtcattaaatctggctagtgttggctcagtcaacaagttggtgtctctttgacgagtaaagtt...

Basic information

species Glycine max
transcript GLYMA20G38950.3
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17400497|gb|BM177279.1|BM177279
EST:     CTTTATTTTGGCGTTTTAAAGCAGTGGCTGAGCNNNNNNNG                         AGGGTTACTGATGCTGACCTCAGAGCATTGGTATCAGATGAAGTTTTTCAA
genomic: CTTTATTTTGGCGTTTTAAAGCAGTGGCTGAGCAAAAAAAGgtaaatcaga ... tttatatcagAGGGTTACTGATGCTGACCTCAGAGCATTGGTATCAGATGAAGTTTTTCAA
EST: gi|192298527|gb|FG988498.1|FG988498
EST:     AGTTCAGACTTTATTTTGGCGTTTTAAAGCAGTGGCTGAGCNNNNNNNNG                         AGGGTTACTGATGCTGACCTCAGAGCATTGGTATCAGATGAAGTTTTTCA
genomic: AGTTCAGACTTTATTTTGGCGTTTTAAAGCAGTGGCTGAGC-AAAAAAAGgtaaatcaga ... tttatatcagAGGGTTACTGATGCTGACCTCAGAGCATTGGTATCAGATGAAGTTTTTCA
EST: gi|192305633|gb|FG994343.1|FG994343
EST:     AAGTTCAGACTTTATTTTGGCGTTTTAAAGCAGTGGCTGAGCNNNNNNNG                         AGGGTTACTGATGCCGACCTCAGAGCATTGGTATCAGATGAAGTTTTTCAA
genomic: AAGTTCAGACTTTATTTTGGCGTTTTAAAGCAGTGGCTGAGCAAAAAAAGgtaaatcaga ... tttatatcagAGGGTTACTGATGCTGACCTCAGAGCATTGGTATCAGATGAAGTTTTTCAA
EST: gi|192324295|gb|FK018271.1|FK018271
EST:     AAGTTCAGACTTTATTTTGGCGTTTTAAAGCAGTGGCTGAGCNNNNNNNG                         AGGGTTACTGATGCTGACCTCAGAGCATTGGTATCAGATGAAGTTTTTCAA
genomic: AAGTTCAGACTTTATTTTGGCGTTTTAAAGCAGTGGCTGAGCAAAAAAAGgtaaatcaga ... tttatatcagAGGGTTACTGATGCTGACCTCAGAGCATTGGTATCAGATGAAGTTTTTCAA