1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagggtccattttctgttgcctagcctagttcaagtaacattttattggagcatgattgtttaatgttgctgtggttgaaatcttctttctttctttaagGTTGTGATGGCCTTGAGATGCGGAGCACATGTCAATGGCAATCTCTACACTGGAATTAATACGAAGCACATCTTTCTGACGAGCAGGATG
species | Glycine max |
transcript | GLYMA20G38950.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGACGATTAATGGGATTGGTGAAAGGGCTGGAAATGCCTCCCTAGAAGAG GTTGTGATGGCCTTGAGATGCGGAGCACATGTCAATG-CAATCTCTACACTEST: gi|24135368|gb|BU925887.1|BU925887
genomic: TGACGATTAATGGGATTGGTGAAAGGGCTGGAAATGCCTCCCTAGAAGAGgtgagggtcc ... tttctttaagGTTGTGATGGCCTTGAGATGCGGAGCACATGTCAATGGCAATCTCTACACT
EST: TGACGATTAATGGGATTGGTGAAAGGGCTGGAAATGCCTCCCTAGAAGAG GTTGTGATGGCCTTGAGATGCGGAGCACATGTCAATGGCAATGTCTACCCTEST: gi|192324295|gb|FK018271.1|FK018271
genomic: TGACGATTAATGGGATTGGTGAAAGGGCTGGAAATGCCTCCCTAGAAGAGgtgagggtcc ... tttctttaagGTTGTGATGGCCTTGAGATGCGGAGCACATGTCAATGGCAATCTCTACACT
EST: TGACGATTAATGGGATTGGTGAAAGGGCTGGAAATGCCTCCCTAGAAGAG GTTGTGATGGCCTTGAGATGCGGAGCACATGTCAATGGCAATCTCTACACT
genomic: TGACGATTAATGGGATTGGTGAAAGGGCTGGAAATGCCTCCCTAGAAGAGgtgagggtcc ... tttctttaagGTTGTGATGGCCTTGAGATGCGGAGCACATGTCAATGGCAATCTCTACACT
ttggagcatgattgtttaatgttgctgtggttgaaatcttctttctttctttaagGTTGTGATGGCCTTGAGATGCGGAGCACATGTCAATGGCAATCTCTACACTGGAATTAATACGAAGCACATCTTTCTGACGAGCAGGATG
gtttaat putative branch site (score: 4)
tcttctttctttcttt putative PPT
attgtttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagggtccattttctgttgcctagcctagttcaagtaacattttattggagcatgattgtttaatgttgctgtggttgaaatcttctttctttctttaagGTTGTGATGGCCTTGAGATGCGGAGCACATGTCAATGGCAATCTCTACACTGGAATTAATACGAAGCACATCTTTCTGACGAGCAGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG