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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattgatattttggattttgctatcatggcttgacaataatagaacaaacataagccaatcaatatctatctggtgcagGTGACTTGTGGAACTCTTGGCCTTTCTACAGCAACTGTCAAACTTTTGAGTAGTGATGGTAGCACACATGTTGCTTGTTCTGTTGGTACAGGACCAGTGG

Basic information

species Glycine max
transcript GLYMA20G38950.3
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17400497|gb|BM177279.1|BM177279
EST:     CAGATGAAGTTTTTCAAGCAGAGCCTGTCTGGAAACTTGGTGATTTGCAG                         GTGACTTGTGGAACTCTTGGCCTTTCTACAGCAACTGTCAAACTTTTGAGT
genomic: CAGATGAAGTTTTTCAAGCAGAGCCTGTCTGGAAACTTGGTGATTTGCAGgtaaattgat ... tctggtgcagGTGACTTGTGGAACTCTTGGCCTTTCTACAGCAACTGTCAAACTTTTGAGT
EST: gi|192298527|gb|FG988498.1|FG988498
EST:     CAGATGAAGTTTTTCAAGCAGAGCCTGTCTGGAAACTTGGTGATTTGCAG                         GTGACTTGTGGAACTCTTGGCCTTTCTACAGCAACTGTCAAACTTTTGAGT
genomic: CAGATGAAGTTTTTCAAGCAGAGCCTGTCTGGAAACTTGGTGATTTGCAGgtaaattgat ... tctggtgcagGTGACTTGTGGAACTCTTGGCCTTTCTACAGCAACTGTCAAACTTTTGAGT
EST: gi|192305633|gb|FG994343.1|FG994343
EST:     CAGATGAAGTTTTTCAAGCAGAGCCTGTCTGGAAACTTGGTGATTTGCAG                         GTGACTTGTGGAACTCTTGGCCTTTCTACAGCAACTGTCAAACTTTTGAGT
genomic: CAGATGAAGTTTTTCAAGCAGAGCCTGTCTGGAAACTTGGTGATTTGCAGgtaaattgat ... tctggtgcagGTGACTTGTGGAACTCTTGGCCTTTCTACAGCAACTGTCAAACTTTTGAGT
EST: gi|207733383|gb|GD713223.1|GD713223
EST:     GCAGAGCCTGTTCTTGGTAAACTTGGTGATTTGCAG                         GTGACTTGTGGAACTCTTGGCCTTTCTACAGCAACTGTCAAACTTTTGAGT
genomic: GCAGAGCCTG-TC-TGG-AAACTTGGTGATTTGCAGgtaaattgat ... tctggtgcagGTGACTTGTGGAACTCTTGGCCTTTCTACAGCAACTGTCAAACTTTTGAGT
EST: gi|4313425|gb|AI460544.1|AI460544
EST:     GGAAACTTGGTGATTTGCAG                         GTGACTTGTGGAACTCTTGGCCTTTCTACAGCAACTGTCAAACTTTTGAGT
genomic: GGAAACTTGGTGATTTGCAGgtaaattgat ... tctggtgcagGTGACTTGTGGAACTCTTGGCCTTTCTACAGCAACTGTCAAACTTTTGAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catggcttgacaataatagaacaaacataagccaatcaatatctatctggtgcagGTGACTTGTGGAACTCTTGGCCTTTCTACAGCAACTGTCAAACTTTTGAGTAGTGATGGTAGCACACATGTTGCTTGTTCTGTTGGTACAGGACCAGTGG
    gcttgac  putative branch site (score: 4)
                                         tctatct  putative PPT
           aataatagaacaaa  TA-rich tract