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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTTTGTGCTGAAGAGGCCAATTGTCTTTCCAAGATCATTGATTTTCTATGTTGTATTCATGATCTTCTACTCTCTGGGTATGGCATTGTCCAAGgtaaaggcctttagttactcgaaacatatgtttctttcctacattaagctttttggttcaataagtgtacctaatgtaaaaccttaatttggatttatatag

Basic information

species Glycine max
transcript GLYMA20G38930.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254316034|gb|GR825843.1|GR825843
EST:     TCTATGTTGTATTCATGATCTTCTACTCTCTGGGTATGGCATTGTCCAAG                         GATATATCTGACGTTAAAGGAGATAAAGCATACGGCATCGATACTTTAGCG
genomic: TCTATGTTGTATTCATGATCTTCTACTCTCTGGGTATGGCATTGTCCAAGgtaaaggcct ... atttatatagGATATATCTGACGTTAAAGGAGATAAAGCATACGGCATCGATACTTTAGCG
EST: gi|254316035|gb|GR825844.1|GR825844
EST:     TCTATG-TGTATTCATGATCTTCTACTCTCTGGGTATGGCATTGTCCAAG                         GATATATCTGACGTTAAAGGAGATAAAGCATACGGCATCGATACTTTAGCG
genomic: TCTATGTTGTATTCATGATCTTCTACTCTCTGGGTATGGCATTGTCCAAGgtaaaggcct ... atttatatagGATATATCTGACGTTAAAGGAGATAAAGCATACGGCATCGATACTTTAGCG
EST: gi|254348039|gb|GR854288.1|GR854288
EST:     TCTATGTTGTATTCATGATCTTCTACTCTCTGGGTATGGCATTGTCCAAG                         GATATATCTGACGTTAAAGGAGATAAAGCATACGGCATCGATACTTTAGCG
genomic: TCTATGTTGTATTCATGATCTTCTACTCTCTGGGTATGGCATTGTCCAAGgtaaaggcct ... atttatatagGATATATCTGACGTTAAAGGAGATAAAGCATACGGCATCGATACTTTAGCG
EST: gi|120493644|gb|EH221811.1|EH221811
EST:     TCTATGTTGTATTCATGATCTTCTACTCTCTGGGTATGGCATTGTCCAAG                         GATATATCTGACGTTAAAGGAGATAAAGCATACGGCATCGATACTTTAGCG
genomic: TCTATGTTGTATTCATGATCTTCTACTCTCTGGGTATGGCATTGTCCAAGgtaaaggcct ... atttatatagGATATATCTGACGTTAAAGGAGATAAAGCATACGGCATCGATACTTTAGCG
EST: gi|192320193|gb|FK014221.1|FK014221
EST:     TCTATGTTGTATTCATGATCTTCTACTCTCTGGGTATGGCATTGTCCAAG                         GATATATCTGACGTTAAAGGAGATAAAGCATACGGCATCGATACTTTAGCG
genomic: TCTATGTTGTATTCATGATCTTCTACTCTCTGGGTATGGCATTGTCCAAGgtaaaggcct ... atttatatagGATATATCTGACGTTAAAGGAGATAAAGCATACGGCATCGATACTTTAGCG
EST: gi|26269574|gb|CA820637.1|CA820637
EST:     TCTATGTTGTATTCATGATCTTCTACTCTCTGGGTATGGCATTGTCCAAG                         GATATATCTGACGTTAAAGGAGATAAAGCATACGGCATCGATACTTTAGCG
genomic: TCTATGTTGTATTCATGATCTTCTACTCTCTGGGTATGGCATTGTCCAAGgtaaaggcct ... atttatatagGATATATCTGACGTTAAAGGAGATAAAGCATACGGCATCGATACTTTAGCG
EST: gi|254348038|gb|GR854287.1|GR854287
EST:     TCTATGTTGTATTCATGATCTTCTACTCTCTGGGTATGGCATTGTCCAAG                         GATATATCTGACGTTAAAGGAGATAAAGCATACGGCATCGATACTTTAGCG
genomic: TCTATGTTGTATTCATGATCTTCTACTCTCTGGGTATGGCATTGTCCAAGgtaaaggcct ... atttatatagGATATATCTGACGTTAAAGGAGATAAAGCATACGGCATCGATACTTTAGCG
EST: gi|254333861|gb|GR848779.1|GR848779
EST:     TGGCATTGTCCAAG                         GATATATCTGACGTTAAAGGAGATAAAGCATACGGCATCGATACTTTAGCG
genomic: TGGCATTGTCCAAGgtaaaggcct ... atttatatagGATATATCTGACGTTAAAGGAGATAAAGCATACGGCATCGATACTTTAGCG