Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agagaacttggtctattattttacatattgatataaatgaatataaacttgtttaagctttccaccagtgtttgaaatttattcgatgccaacattttagGGTCTGGGACATGCTATTCTTGCTTCAATTCTCTTGTACCAAGCCAAATCTATATACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCT

Basic information

species Glycine max
transcript GLYMA20G38930.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254316034|gb|GR825843.1|GR825843
EST:     CCCTCTTGGCAGGAGCAACATCTTCTTACCTTTGGATTAAAATTGTCACG                         GGTCTGGGACATGCTATTCTTGCTTCAATTCTCTTGTACCAAGCCAAATCT
genomic: CCCTCTTGGCAGGAGCAACATCTTCTTACCTTTGGATTAAAATTGTCACGgtaatatact ... aacattttagGGTCTGGGACATGCTATTCTTGCTTCAATTCTCTTGTACCAAGCCAAATCT
EST: gi|254316035|gb|GR825844.1|GR825844
EST:     CCCTCTTGGCAGGAGCAACATCTTCTTACCTTTGGATTAAAATTGTCACG                         GGTCTGGGACATGCTATTCTTGCTTCAATTCTCTTGTACCAAGCCAAATCT
genomic: CCCTCTTGGCAGGAGCAACATCTTCTTACCTTTGGATTAAAATTGTCACGgtaatatact ... aacattttagGGTCTGGGACATGCTATTCTTGCTTCAATTCTCTTGTACCAAGCCAAATCT
EST: gi|254348039|gb|GR854288.1|GR854288
EST:     CCCTCTTGGCAGGAGCAACATCTTCTTACCTTTGGATTAAAATTGTCACG                         GGTCTGGGACATGCTATTCTTGCTTCAATTCTCTTGTACCAAGCCAAATCT
genomic: CCCTCTTGGCAGGAGCAACATCTTCTTACCTTTGGATTAAAATTGTCACGgtaatatact ... aacattttagGGTCTGGGACATGCTATTCTTGCTTCAATTCTCTTGTACCAAGCCAAATCT
EST: gi|120493644|gb|EH221811.1|EH221811
EST:     CCCTCTTGGCAGGAGCAACATCTTCTTACCTTTGGATTAAAATTGTCACG                         GGTCTGGGACATGCTATTCTTGCTTCAATTCTCTTGTACCAAGCCAAATCT
genomic: CCCTCTTGGCAGGAGCAACATCTTCTTACCTTTGGATTAAAATTGTCACGgtaatatact ... aacattttagGGTCTGGGACATGCTATTCTTGCTTCAATTCTCTTGTACCAAGCCAAATCT
EST: gi|192320193|gb|FK014221.1|FK014221
EST:     CCCTCTTGGCAGGAGCAACATCTTCTTACCTTTGGATTAAAATTGTCACG                         GGTCTGGGACATGCTATTCTTGCTTCAATTCTCTTGTACCAAGCCAAATCT
genomic: CCCTCTTGGCAGGAGCAACATCTTCTTACCTTTGGATTAAAATTGTCACGgtaatatact ... aacattttagGGTCTGGGACATGCTATTCTTGCTTCAATTCTCTTGTACCAAGCCAAATCT
EST: gi|26269574|gb|CA820637.1|CA820637
EST:     CCCTCTTGGCAGGAGCAACATCTTCTTACCTTTGGATTAAAATTGTCACG                         GGTCTGGGACATGCTATTCTTGCTTCAATTCTCTTGTACCAAGCCAAATCT
genomic: CCCTCTTGGCAGGAGCAACATCTTCTTACCTTTGGATTAAAATTGTCACGgtaatatact ... aacattttagGGTCTGGGACATGCTATTCTTGCTTCAATTCTCTTGTACCAAGCCAAATCT
EST: gi|254348038|gb|GR854287.1|GR854287
EST:     CCCTCTTGGCAGGAGCAACATCTTCTTACCTTTGGATTAAAATTGTCACG                         GGTCTGGGACATGCTATTCTTGCTTCAATTCTCTTGTACCAAGCCAAATCT
genomic: CCCTCTTGGCAGGAGCAACATCTTCTTACCTTTGGATTAAAATTGTCACGgtaatatact ... aacattttagGGTCTGGGACATGCTATTCTTGCTTCAATTCTCTTGTACCAAGCCAAATCT
EST: gi|254333861|gb|GR848779.1|GR848779
EST:     CCCTCTTGGCAGGAGCAACATCTTCTTACCTTTGGATTAAAATTGTCACG                         GGTCTGGGACATGCTATTCTTGCTTCAATTCTCTTGTACCAAGCCAAATCT
genomic: CCCTCTTGGCAGGAGCAACATCTTCTTACCTTTGGATTAAAATTGTCACGgtaatatact ... aacattttagGGTCTGGGACATGCTATTCTTGCTTCAATTCTCTTGTACCAAGCCAAATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacttgtttaagctttccaccagtgtttgaaatttattcgatgccaacattttagGGTCTGGGACATGCTATTCTTGCTTCAATTCTCTTGTACCAAGCCAAATCTATATACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCT
                       tgtttgaaatttatt  TA-rich tract