1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...atttgtatatttattttcaatttgtttccactaaatttgttgtctttgtgcatacaaagtgaaatataatcatgtattgatgtcttgtttctttttgcagTTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGAGGAAGGTTAAAGCAATGTTCATAGCACATTTGGCAGAATAAAAAGAATA
species | Glycine max |
transcript | GLYMA20G38930.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAG TTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGAEST: gi|254316035|gb|GR825844.1|GR825844
genomic: ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAGgtaattctct ... ctttttgcagTTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGA
EST: ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAG TTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGAEST: gi|254348039|gb|GR854288.1|GR854288
genomic: ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAGgtaattctct ... ctttttgcagTTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGA
EST: ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAG TTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGAEST: gi|120493644|gb|EH221811.1|EH221811
genomic: ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAGgtaattctct ... ctttttgcagTTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGA
EST: ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAG TTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGAEST: gi|192320193|gb|FK014221.1|FK014221
genomic: ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAGgtaattctct ... ctttttgcagTTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGA
EST: ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGGTGATCTGGAAG TTGTTGTACGCAGCATACTTTCTCATGGCTTTAAT-AGATAAG-ATGTTGEST: gi|26269574|gb|CA820637.1|CA820637
genomic: ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAGgtaattctct ... ctttttgcagTTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTG
EST: ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAG TTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGAEST: gi|254348038|gb|GR854287.1|GR854287
genomic: ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAGgtaattctct ... ctttttgcagTTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGA
EST: ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAG TTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGAEST: gi|254333861|gb|GR848779.1|GR848779
genomic: ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAGgtaattctct ... ctttttgcagTTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGA
EST: GCTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAG TTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGA
genomic: ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAGgtaattctct ... ctttttgcagTTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGA
ttgtgcatacaaagtgaaatataatcatgtattgatgtcttgtttctttttgcagTTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGAGGAAGGTTAAAGCAATGTTCATAGCACATTTGGCAGAATAAAAAGAATA
tattgat putative branch site (score: 3)
tgtcttgtttcttttt CT-rich tract
aaatataatcatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttgtatatttattttcaatttgtttccactaaatttgttgtctttgtgcatacaaagtgaaatataatcatgtattgatgtcttgtttctttttgcagTTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGAGGAAGGTTAAAGCAATGTTCATAGCACATTTGGCAGAATAAAAAGAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA