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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catcatttcatcatgatcttttgttgcaatatttttttaataagaatcttctttttgtgtgcatggccactaatactacatccaacatttggtggtgtagGTTCTTGTGCGTCAAAAGCTTCGAAATACAAAAAGAAAACTCAAATAGAATGTAATATTTTGAGGTCACAACAGTCAAGTTTGAACCATCATTACAAGCG

Basic information

species Glycine max
transcript GLYMA20G38930.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37995417|gb|CF807006.1|CF807006
EST:     TGGGAATCTCTGGCGGAGAAAACATTCCACAAATAATATTTACTATGCAA                         GTTCTTGTGCGTCAAAAGCTTCGAAATACAAAAAGAAAACTCAAATAGAAT
genomic: TGGGAATCTCTGGCGGAGAAAACATTCCACAAATAATATTTACTATGCAAgtatgtctta ... ggtggtgtagGTTCTTGTGCGTCAAAAGCTTCGAAATACAAAAAGAAAACTCAAATAGAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcttctttttgtgtgcatggccactaatactacatccaacatttggtggtgtagGTTCTTGTGCGTCAAAAGCTTCGAAATACAAAAAGAAAACTCAAATAGAATGTAATATTTTGAGGTCACAACAGTCAAGTTTGAACCATCATTACAAGCG
                      cactaat  putative branch site (score: 2)
                         taatacta  TA-rich tract