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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGACATGCTATTCTTGCTTCAATTCTCTTGTACCAAGCCAAATCTATATACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAGgtaattctcttcaagactatttaccatttaaggagctcaatataaaaatcattttgtaaaagaaatagttatccgatcactttttccctgttttgagaaa...

Basic information

species Glycine max
transcript GLYMA20G38930.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254316034|gb|GR825843.1|GR825843
EST:     ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAG                         TTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGA
genomic: ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAGgtaattctct ... ctttttgcagTTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGA
EST: gi|254316035|gb|GR825844.1|GR825844
EST:     ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAG                         TTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGA
genomic: ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAGgtaattctct ... ctttttgcagTTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGA
EST: gi|254348039|gb|GR854288.1|GR854288
EST:     ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAG                         TTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGA
genomic: ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAGgtaattctct ... ctttttgcagTTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGA
EST: gi|120493644|gb|EH221811.1|EH221811
EST:     ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAG                         TTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGA
genomic: ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAGgtaattctct ... ctttttgcagTTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGA
EST: gi|192320193|gb|FK014221.1|FK014221
EST:     ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGGTGATCTGGAAG                         TTGTTGTACGCAGCATACTTTCTCATGGCTTTAAT-AGATAAG-ATGTTG
genomic: ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAGgtaattctct ... ctttttgcagTTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTG
EST: gi|26269574|gb|CA820637.1|CA820637
EST:     ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAG                         TTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGA
genomic: ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAGgtaattctct ... ctttttgcagTTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGA
EST: gi|254348038|gb|GR854287.1|GR854287
EST:     ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAG                         TTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGA
genomic: ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAGgtaattctct ... ctttttgcagTTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGA
EST: gi|254333861|gb|GR848779.1|GR848779
EST:     GCTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAG                         TTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGA
genomic: ACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAGgtaattctct ... ctttttgcagTTGTTGTACGCAGCATACTTTCTCATGGCTTTAATTAGATAAGGATGTTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGACATGCTATTCTTGCTTCAATTCTCTTGTACCAAGCCAAATCTATATACTTGAGCAACAAAGTTTCCACTATATCGTTTTATATGTTGATCTGGAAGgtaattctcttcaagactatttaccatttaaggagctcaatataaaaatcattttgtaaaagaaatagttatccgatcactttttccctgttttgagaaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG