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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcaatatatagattcaatcatttctacaatgatatttgttaacatgagtttcattcatagacttggaggcttattattctatttaattacttttacagAGCTTTTGGCTTAGCTTGGTTATAGGTTCTTGGCCGTTGATTTGGAATGTTGTATTGACCTCGTCAGTATGGAATGTTTATTCAATCAAT

Basic information

species Glycine max
transcript GLYMA20G38930.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254316034|gb|GR825843.1|GR825843
EST:     CATTGCTGCATCACTTTTAATTATG                         AGCTTTTGGCTTAGCTTGGTTATAGGTTCTTGGCCGTTGATTTGGAATGTT
genomic: CATTGCTGCATCACTTTTAATTATGgtgcaatata ... acttttacagAGCTTTTGGCTTAGCTTGGTTATAGGTTCTTGGCCGTTGATTTGGAATGTT
EST: gi|192320193|gb|FK014221.1|FK014221
EST:     AATTATCATTTACAACTGCTGTCTTCATTGCTGCATCACTTTTAATTATG                         AGCTTTTGGCTTAGCTTGGTTATAGGTTCTTGGCCGTTGATTTGGAATGTT
genomic: AATTATCATTTACAACTGCTGTCTTCATTGCTGCATCACTTTTAATTATGgtgcaatata ... acttttacagAGCTTTTGGCTTAGCTTGGTTATAGGTTCTTGGCCGTTGATTTGGAATGTT
EST: gi|17964435|gb|BM271170.1|BM271170
EST:     AATTATCATTTACAACTGCTGTCTTCATTGCTGCATCACTTTTAATTATG                         AGCTTTTGGCTTAGCTTGGTTATAGGTTCTTGGCCGTTGATTTGGAATGTT
genomic: AATTATCATTTACAACTGCTGTCTTCATTGCTGCATCACTTTTAATTATGgtgcaatata ... acttttacagAGCTTTTGGCTTAGCTTGGTTATAGGTTCTTGGCCGTTGATTTGGAATGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgagtttcattcatagacttggaggcttattattctatttaattacttttacagAGCTTTTGGCTTAGCTTGGTTATAGGTTCTTGGCCGTTGATTTGGAATGTTGTATTGACCTCGTCAGTATGGAATGTTTATTCAATCAAT
                                     atttaat  putative branch site (score: 4)
                                           ttactttt  CT-rich tract
                           ttattattctatttaa  TA-rich tract