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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCCTGTTAAGATGGAAGAGACACCCGCTGCTTGCGACAATATGCACAATTTCTGTTTGGGCATTTATATTGCCAATAACATTTTTCCTTCACATGCAGgttctgttttatagccaattatgcttttatagaccagttcgatctacacgagcatgcattagcttatatgcacgtaataataataacaaatctttttccc...

Basic information

species Glycine max
transcript GLYMA20G38930.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254316034|gb|GR825843.1|GR825843
EST:     TTTCTGTTTGGGCATTTATATTGCCAATAACATTTTTCCTTCACATGCAG                         ACTTTTGTGCTGAAGAGGCCAATTGTCTTTCCAAGATCATTGATTTTCTAT
genomic: TTTCTGTTTGGGCATTTATATTGCCAATAACATTTTTCCTTCACATGCAGgttctgtttt ... aaatgtccagACTTTTGTGCTGAAGAGGCCAATTGTCTTTCCAAGATCATTGATTTTCTAT
EST: gi|254348039|gb|GR854288.1|GR854288
EST:     TTTCTGTTTGGGCATTTATATTGCCAATAACATTTTTCCTTCACATGCAG                         ACTTTTGTGCTGAAGAGGCCAATTGTCTTTCCAAGATCATTGATTTTCTAT
genomic: TTTCTGTTTGGGCATTTATATTGCCAATAACATTTTTCCTTCACATGCAGgttctgtttt ... aaatgtccagACTTTTGTGCTGAAGAGGCCAATTGTCTTTCCAAGATCATTGATTTTCTAT
EST: gi|120493644|gb|EH221811.1|EH221811
EST:     TTCCTTCACAGGCAG                         ACTTTTGTGCTGAAGAGCCCAATTGTCTTTCCAAGATCATTGATTTTCTAT
genomic: TTCCTTCACATGCAGgttctgtttt ... aaatgtccagACTTTTGTGCTGAAGAGGCCAATTGTCTTTCCAAGATCATTGATTTTCTAT
EST: gi|192320193|gb|FK014221.1|FK014221
EST:     TTTCTGTTTGGGCATTTATATTGCCAATAACATTTTTCCTTCACATGCAG                         ACTTTTGTGCTGAAGAGGCCAATTGTCTTTCCAAGATCATTGATTTTCTAT
genomic: TTTCTGTTTGGGCATTTATATTGCCAATAACATTTTTCCTTCACATGCAGgttctgtttt ... aaatgtccagACTTTTGTGCTGAAGAGGCCAATTGTCTTTCCAAGATCATTGATTTTCTAT
EST: gi|26269574|gb|CA820637.1|CA820637
EST:     TTTCTGTTTGGGCATTTATATTGCCAATAACATTTTTCCTTCACATGCAG                         ACTTTTGTGCTGAAGAGGCCAATTGTTTTTCCAAGATCATTGATTTTCTAT
genomic: TTTCTGTTTGGGCATTTATATTGCCAATAACATTTTTCCTTCACATGCAGgttctgtttt ... aaatgtccagACTTTTGTGCTGAAGAGGCCAATTGTCTTTCCAAGATCATTGATTTTCTAT
EST: gi|254348038|gb|GR854287.1|GR854287
EST:     TTTCTGTTTGGGCATTTATATTGCCAATAACATTTTTCCTTCACATGCAG                         ACTTTTGTGCTGAAGAGGCCAATTGTCTTTCCAAGATCATTGATTTTCTAT
genomic: TTTCTGTTTGGGCATTTATATTGCCAATAACATTTTTCCTTCACATGCAGgttctgtttt ... aaatgtccagACTTTTGTGCTGAAGAGGCCAATTGTCTTTCCAAGATCATTGATTTTCTAT