Sequence
atgc intronic sequence ATGC exonic sequenceGGAAATTCTTAGTTTGAAAGATAGTGTTGAGAAAGACACCTTCTTCCGCAAGCTTCCAAATTTGGCAGAACAGCTTCCTCAGCAGATTGTGTTGAAAAAGgtacgtctctttggaagttctaattttaaactttaacattatcaatattttatcccaattgattatgtcaaacaattttggttttcacag
Basic information
species | Glycine max |
transcript | GLYMA20G36180.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G36180.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G098078_T02 (Zea mays), 5'ss of exon 9
GGAAATTCTTAGTTTGAAAGATAGTGTTGAGAAAGACACCTTCTTCCGCAAGCTTCCAAATTTGGCAGAACAGCTTCCTCAGCAGATTGTGTTGAAAAAGgtacgtc-----tctttggaagttctaattttaaactttaa--cattatcaatattttatcccaattgattatgtcaaacaattttggt--tttcacag---------------------------
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GGAAATTCTTAATTTGAAAGACACCTTTGAGAAAGACAGCTTTTTCCGGAAGCTTCCCAATATAGCTGAACAGCTTCCCCGTGAGATAGTCCTGAAAAAGgtacttccgaagtctcaagtagaacc--ctctattccttgattcatgattattctctaccttcgtttatttgttccaaaccagccgggtgattttatgggtatactttgggttacgttgtgcacag
upper sequence: GLYMA20G36180.1 (Glycine max), 5'ss of exon 9
lower sequence: AT2G40730.1 (Arabidopsis thaliana), 5'ss of exon 9
GGAAATTCTTAGTTTGAAAGATAGTGTTGAGAAAGACACCTTCTTCCGCAAGCTTCCAAATTTGGCAGAACAGCTTCCTCAGCAGATTGTGTTGAAAAAGgtacgtctct--------ttggaagttctaatt----ttaaactttaacattatcaatattttatcccaattgattatgtcaaacaattttggttttcacag
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GGATATTCTGAACTTGAAAGACAGTGTCGAAAAAGATACTTTCTTCCGCAAACTTCCAAATGTTGCTGAACAGCTTCCTCGGGAGATTGTGCTTAAGAAGgtatgaatctgaattttattgggtactaggataacaatttaccttttgagttggaggttttgtgttttgctttttgactttaacc--ttttggttaatgcag
upper sequence: GLYMA20G36180.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0067g03110.t01 (Vitis vinifera), 5'ss of exon 9
GGAAATTCTTAGTTTGAAAGATAGTGTTGAGAAAGACACCTTCTTCCGCAAGCTTCCAAATTTGGCAGAACAGCTTCCTCAGCAGATTGTGTTGAAAAAGgtacgtctctt---------tggaagttctaattttaaactttaacattatcaatattttatcccaattgattatgtcaaacaattttggttttcacag
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GGACATTCTTAATTTGAAGGACAGTGTTGAAAAGGATACCTTCTTCCGTAAGCTTCCAAATCTAGCAGAGCAGCTTCCTCGCCAAATAGTGCTGAAAAAGgtgtgactattgatttctgatgtgaaatgtcacacttagttctaacagcaatgtttttccatgccaagttctgattttg--tcattttc-tattcacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37997477|gb|CF809066.1|CF809066EST: AGCTTCCAAATTTGGCAGAACAGCTTCCTCAGCAGATTGTGTTGAAAAAG TTACTTCCTTTATTAGCTTCTGCGCTTGAATTTGGTTCAGCTTCTGCCCCT
genomic: AGCTTCCAAATTTGGCAGAACAGCTTCCTCAGCAGATTGTGTTGAAAAAGgtacgtctct ... gttttcacagTTACTTCCTTTATTAGCTTCTGCGCTTGAATTTGGTTCAGCTTCTGCCCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAAATTCTTAGTTTGAAAGATAGTGTTGAGAAAGACACCTTCTTCCGCAAGCTTCCAAATTTGGCAGAACAGCTTCCTCAGCAGATTGTGTTGAAAAAGgtacgtctctttggaagttctaattttaaactttaacattatcaatattttatcccaattgattatgtcaaacaattttggttttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT