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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAATACAGCAGAGGCTACTGAGGGTACAGCCATTGGAATCTCTTCACTTCCAGGAAATGCAGGTTTACTTGGgtaagtcagtccaaacttttgccaggctgttcacatgttaaacaataaagagaggtgttagtttgagtttttttatattaaataatttagattacattat...

Basic information

species Glycine max
transcript GLYMA20G36180.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36180.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G098042_T01 (Zea mays), 5'ss of exon 3
ACAAATACAGCAGAGGCTACTGAGGGTACAGCCATTGGAATCTCTTCACTTCCAGGAAATGCAGGTTTACTTGGgtaagtcagtccaaacttttgccaggctgttcacatgttaaacaataaagagaggtgttagtttgagtttttttatattaaataatttagattac-attat
   ||||| | |||    |  | || |  |   | |||  |    | |   || |||||||||||||||||||||||||  |    | |  || ||          | ||    |    | |  |  || |   |||| ||||  ||   |     | | |  | | ||    | 
CTTAATACGGGAGACAACAGGGTGGCTGAAAGTACTGGTGTTAAGTTAAAGCCTGGAAATGCAGGTTTACTTGGgtaagctatcttacatcttggctgtcaaaaggaaataaatattgtttataaccggggcctgttttagttcattgccacactttgagtcggttcactgcca-

upper sequence: GLYMA20G36180.1 (Glycine max), 5'ss of exon 18
lower sequence: AC218972.3_FGT001 (Zea mays), 5'ss of exon 19
ACAAATACAGCAGAGGCTACTGAGGGTACAGCCATTGGAATCTCTTCACTTCCAGGAAATGCAGGTTTACTTGGgtaagtcagtccaaacttttgccaggctgttcacatgttaaacaataaagagaggtgttagtttgagtttttttatattaaataatttagattacattat
   ||||||| |||    | || || |  |   | |||  |    | |   || |||||||||||||||||||||||||  |    |    || ||          | ||    ||   | |  |   |||   ||||  |||   |   |           || ||   | | 
CTTAATACAGGAGACAACAGTGTGGCTGAAAGTACTGGTGTTAAGTTAAAGCCTGGAAATGCAGGTTTACTTGGgtaagctatctaacgtcttggctgccaaaaggaaataaataatgtttataatcagtgcctgttttggttgactgccacacttcgccacagtttgattcaa