1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...atattcccaactccattactcaagttaaattcatttacttgctgacttttatgttctcgggtactaattggtagggtttactttatttttttaattttagCCTCAAGTTTGCTATCCAAAAGTACGCCAAAGTTGAGCAAGGATGAAGATGGTGATTTGTGGGGTTCCATAGCAGCTCCTGCTCCAAAATCATCAAAACC
species | Glycine max |
transcript | GLYMA20G36180.1 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: AGCAGCTCAAAGGAGGCCAGTTTCTCAACCTGTTTCACAGATAAAACAAG CCTCAAGTTTGCTATCCAAAAGTACGCCAAAGTTGAGCAAGGATGAAGATGEST: gi|9902920|gb|BE611888.1|BE611888
genomic: AGCAGCTCAAAGGAGGCCAGTTTCTCAACCTGTTTCACAGATAAAACAAGgtattaacta ... ttaattttagCCTCAAGTTTGCTATCCAAAAGTACGCCAAAGTTGAGCAAGGATGAAGATG
EST: AGCAGCTCAAAGGAGGCCAGTTTCTCAACCTGTTTCACAGATAAAACAAG CCTCAAGTTTGCTATCCAAAAGTACGCCAAAGTTGAGCAAGGATGAAGATGEST: gi|10231135|gb|BE800082.1|BE800082
genomic: AGCAGCTCAAAGGAGGCCAGTTTCTCAACCTGTTTCACAGATAAAACAAGgtattaacta ... ttaattttagCCTCAAGTTTGCTATCCAAAAGTACGCCAAAGTTGAGCAAGGATGAAGATG
EST: AGCAGCTCAAAGGAGGCCAGTTTCTCAACCTGTTTCACAGATAAAACAAG CCTCAAGTTTGCTATCCAAAAGTACGCCAAAGTTGAGCAAGGATGAAGATGEST: gi|16996856|gb|BM086228.1|BM086228
genomic: AGCAGCTCAAAGGAGGCCAGTTTCTCAACCTGTTTCACAGATAAAACAAGgtattaacta ... ttaattttagCCTCAAGTTTGCTATCCAAAAGTACGCCAAAGTTGAGCAAGGATGAAGATG
EST: AGCAGCTCAAAGGAGGCCAGTTTCTCAACCTGTTTCACAGATAAAACAAG CCTCAAGTTTGCTATCCAAAAGTACGCCAAAGTTGAGCAAGGATGAAGATGEST: gi|15285880|gb|BI469771.1|BI469771
genomic: AGCAGCTCAAAGGAGGCCAGTTTCTCAACCTGTTTCACAGATAAAACAAGgtattaacta ... ttaattttagCCTCAAGTTTGCTATCCAAAAGTACGCCAAAGTTGAGCAAGGATGAAGATG
EST: AGCAGCTCAAAGGAGGCCAGTTTCTCAACCTGTTTCACAGATAAAACAAG CCTCAAGTTTGCTATCCAAAAGTACGCCAAAGTTGAGCAAGGATGAAGATG
genomic: AGCAGCTCAAAGGAGGCCAGTTTCTCAACCTGTTTCACAGATAAAACAAGgtattaacta ... ttaattttagCCTCAAGTTTGCTATCCAAAAGTACGCCAAAGTTGAGCAAGGATGAAGATG
cttttatgttctcgggtactaattggtagggtttactttatttttttaattttagCCTCAAGTTTGCTATCCAAAAGTACGCCAAAGTTGAGCAAGGATGAAGATGGTGATTTGTGGGGTTCCATAGCAGCTCCTGCTCCAAAATCATCAAAACC
tttactttattttttt CT-rich tract
tagggtttactttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atattcccaactccattactcaagttaaattcatttacttgctgacttttatgttctcgggtactaattggtagggtttactttatttttttaattttagCCTCAAGTTTGCTATCCAAAAGTACGCCAAAGTTGAGCAAGGATGAAGATGGTGATTTGTGGGGTTCCATAGCAGCTCCTGCTCCAAAATCATCAAAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - ccaactc
- - - - - - - - - - - - - - - - - - - -tgctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtaggg