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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTACCCTCATGTTGCAACTGGGTTCTCTGATACATCTGCTTTTCTGAGGGAACTTACTCTCAAGTCCATGCTAATTCTGGCTCCAAAGgtatgtctatttatattcatcttagcaaaattttatttcctttagattctactaatttactttaaaaatgagagatgttattggtctaattagaatttca...

Basic information

species Glycine max
transcript GLYMA20G36180.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36180.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os01g60440.1 (Oryza sativa), 5'ss of exon 12
GTTTACCCTCATGTTGCAACTGGGTTCTCTGATACATCTGCTTTTCTGAGGGAACTTACTCTCAAGTCCATGCTAATTCTGGCTCCAAAGgtatg--tctatttatattcatcttagcaaaattttatttcct---ttagattctactaatttactttaaaaatgagagatgttattggtctaattagaatttca
|||| ||| |||||||| ||||||||||||||||| |||||||||||  | ||||| ||  | ||||| |||||  |  |||| || || ||| |   ||    |   ||  | |    ||  |||    ||      | || ||  |   |  |||| |   | |  |||  |  ||   |||    | |||  
GTTTTCCCCCATGTTGCCACTGGGTTCTCTGATACTTCTGCTTTTCTTCGTGAACTGACCTTGAAGTCTATGCTTGTATTGGCACCCAAAgtaagaccctcccaaccctctgcatgatcaacatttgcaccccgaacaaaatccttgtggatgtctttcatttttactgattgtgctgtgttaac---agttt--

upper sequence: GLYMA20G36180.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv13s0067g03110.t01 (Vitis vinifera), 5'ss of exon 12
GTTTACCCTCATGTTGCAACTGGGTTCTCTGATACATCTGCTTTTCTGAGGGAACTTACTCTCAAGTCCATGCTAATTCTGGCTCCAAAGgtatgtctatttatatt-catcttagcaaaattttatttcctttagattctactaatttactttaaaaatgagagatgttattggtctaattagaatttca
|||||  |||||||||| ||||||||||| || || |||||||||||  ||||| | || || || |||||||| ||||| ||||| ||||||| | ||| |  ||| ||| ||       |   | |  | |    |  |  |  ||     |||  |||| |  |  | || || | || ||||||   
GTTTATACTCATGTTGCTACTGGGTTCTCAGACACGTCTGCTTTTCTTCGGGAATTGACACTTAAATCCATGCTTATTCTTGCTCCTAAGgtatttgtatctcaatttcatttttctttggtggcaatatcatagcttcatggtgtttggtaataatgatgaaactttctgttagtgtgatgagaattct-