Sequence
atgc intronic sequence ATGC exonic sequenceATTAGCTTCTGCGCTTGAATTTGGTTCAGCTTCTGCCCCTGCTTTGACTGCATTGCTGAAAATGGGTTCCAGTCTTTCTGCTGAGGAGTTCCGTGTCAAGgtgtataacaacttcaacacctttatgatgccccttttctactttctttcatacggtgcttgattctctctctctaaccaggatttcttctcatgcttgtattggatttcactatatag
Basic information
species | Glycine max |
transcript | GLYMA20G36180.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G36180.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G40730.1 (Arabidopsis thaliana), 5'ss of exon 10
ATTAGCTTCTGCGCTTGAATTTGGTTCAGCTTCTGCCCCTGCTTTGACTGCATTGCTGAAAATGGGTTCCAGTCTTTCTGCTGAGGAGTTCCGTGTCAAGgtgtataacaacttcaacacctttatgat-gccccttttctactttctttcatacggtgcttgattctctctctctaaccaggatttcttctcatgcttgtattggatttcactatatag
|||||||||| | |||||||||||||||||| |||| ||||| || ||||| || || || |||||||| | | || |||| || ||| |||||||||| | | || | | ||| || | | | | ||| || || | || || | | | | | || | | | | || |
ATTAGCTTCTTCCCTTGAATTTGGTTCAGCTGCTGCTCCTGCATTAACTGCCTTACTTAAGATGGGTTCGTGGTTATCAACTGAAGATTTCAGTGTCAAGgtttgtt-cagccatgctaaatttctgtttaaacgctctatacactccaatgctgtatgtatacttttcagttattgtctaaaggtactcccttttatgattttag--------------
upper sequence: GLYMA20G36180.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv13s0067g03110.t01 (Vitis vinifera), 5'ss of exon 10
ATTAGCTTCTGCGCTTGAATTTGGTTCAGCTTCTGCCCCTGCTTTGACTGCATTGCTGAAAATGGGTTCCAGTCTTTCTGCTGAGGAGTTCCGTGTCAAGgtgtataacaacttcaacacctt-tatgatgccccttttctactttctttcat--acggtg--cttgattctctctctctaaccaggatttcttctcatgcttgtatt----ggatttcactatatag----------------------
|| || || || | ||||||||||||||| |||| ||||| ||||||||| | ||||||||| ||| | ||||| ||||| || ||| ||| |||||| ||| || | |||| | | | | | | | ||| || || | || | ||| | | | || | |||||| ||| || |||| | | |
GTTGGCCTCCGCTTTAGAATTTGGTTCAGCTGCTGCTCCTGCCTTGACTGCACTATTGAAAATGGCTTCTTGGCTTTCAGCTGAAGATTTCAGTGCCAAGgt-catactcttttgagtacctcatgtaaacttattatgttggcatttttaattaacaataattttatctttctttatgtgtttagatgcttatctcatttctgtttttctaaaatttgatgttgtcaaactcctcatttttatatacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37997477|gb|CF809066.1|CF809066EST: CATTGCTGAAAATGGGTTCCAGTCTTTCTGCTGAGGAGTTCCGTGTCAAG GTGCTTCCAACAATTGTTAAACTTTNTGCATCCAATGACCGAGCT
genomic: CATTGCTGAAAATGGGTTCCAGTCTTTCTGCTGAGGAGTTCCGTGTCAAGgtgtataaca ... cactatatagGTGCTTCCAACAATTGTTAAACTTTTTGCATCCAATGACCGAGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTAGCTTCTGCGCTTGAATTTGGTTCAGCTTCTGCCCCTGCTTTGACTGCATTGCTGAAAATGGGTTCCAGTCTTTCTGCTGAGGAGTTCCGTGTCAAGgtgtataacaacttcaacacctttatgatgccccttttctactttctttcatacggtgcttgattctctctctctaaccaggatttcttctcatgcttgtattggatttcactatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG