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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCTGCTTCCAGATTACCAGCGGCTACTGAGTTCTGTGCCCTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGTGgtgagtgcttcttgatatatttttagttatcatttacagaaacattgttcacttagcattgttggagtttgctgctttgtttgaaggattcatgtgtttt...

Basic information

species Glycine max
transcript GLYMA20G36180.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36180.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G40730.1 (Arabidopsis thaliana), 5'ss of exon 8
TCTCTGCTTCCAGATTACCAGCGGCTACTGAGTTCTGTGCCCTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGTGgtgagtgcttcttgatatatttttagttatcatttacagaaacattgttcacttagcattgttggagtttgctgctttgtttgaaggatt-catgtgtttt-
||||||||||||||||| ||||| || || |||||  |||| ||||| ||||| || || ||||| ||| |||||||  | ||| |   |||| ||   |  ||  |  | |  |      ||  |||      ||  |  |  |  |  |      ||| | || |   || | | |||    
TCTCTGCTTCCAGATTATCAGCGACTCCTAAGTTCCATGCCTTCTCGCAGATTGAACACCTCAAAACTTCTAGAAAATGGCGgtaa--tcttcctgtcttgattgcaaattttgtaccttaaacaattcactgtttttcgcttctttacatgttctttttctctgtatatttgcttttgtccct

upper sequence: GLYMA20G36180.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv13s0067g03110.t01 (Vitis vinifera), 5'ss of exon 8
TCTCTGCTTCCAGATTACCAGCGGCTACTGAGTTCTGTGCCCTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGTGgtgagtgcttcttgat-atatttttagt--tatcatttacagaaacattgttcacttagcattgttgg---agtttgctgctttgtttgaag-gattcatgtgtttt
||||| ||||||||||| ||||||||  |||||||  ||||  |||| || || || ||||| |||||||||||||| |||||||||| ||| |   |  || |  ||||  | |  || ||||   |  ||     ||    ||        | ||||| |     | | ||  ||   ||       
TCTCTACTTCCAGATTATCAGCGGCTCTTGAGTTCCATGCCTGCTCGCAGGTTGAACACATCGAAGCTTATAGAAAATAGTGgtgagttcttatgatttgtactactagtattgtagttaacagctgccatgaatttttgttcttaggaattcaatttgcagtcccatgtaaaatgagaaat-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37997477|gb|CF809066.1|CF809066
EST:     TTCTGTGCCCTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGTG                         AGTATTTTCAAAATAAGTTGGTAGACACAATACATTTCATGGAAATTCTTA
genomic: TTCTGTGCCCTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGTGgtgagtgctt ... acatgtgcagAGTATTTTCAAAATAAGTTGGTAGACACAATACATTTCATGGAAATTCTTA