1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gtatttaatactgttgaagaattcataattttccacattggaaattctcaattaatgtttttgtctttttttttgtttaaaaaattggtttccaatttagGAACTCAGTGGCATTGTTCCAGCTCGAGAAAAGCAAAAGATTGTGAGAACTGCTATCAGCAAG
species | Glycine max |
transcript | GLYMA20G35990.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCTCAATAACTGGGGACTTGCTCTTCAG GAACTCAGTGGCATTGTTCCAGCTCGAGAAAAGCAAAAGATTGTGAGAACTEST: gi|254324005|gb|GR836237.1|GR836237
genomic: GCTCAATAACTGGGGACTTGCTCTTCAGgtatatttaa ... tccaatttagGAACTCAGTGGCATTGTTCCAGCTCGAGAAAAGCAAAAGATTGTGAGAACT
EST: GCGCTCAATAACTGGGGACTTGCTCTTCAG GAACTCAGTGGCATTGTTCCAGCTCGAGAAAAGCAAAAGATTGTGAGAACTEST: gi|15814226|gb|BI786501.1|BI786501
genomic: GCGCTCAATAACTGGGGACTTGCTCTTCAGgtatatttaa ... tccaatttagGAACTCAGTGGCATTGTTCCAGCTCGAGAAAAGCAAAAGATTGTGAGAACT
EST: GCGCTCAATAACTGGGGACTTGCTCTTCAG GAACTCAGTGGCATTGTTCCAGCTCGAGAAAAGCAAAAGATTGTGAGAACT
genomic: GCGCTCAATAACTGGGGACTTGCTCTTCAGgtatatttaa ... tccaatttagGAACTCAGTGGCATTGTTCCAGCTCGAGAAAAGCAAAAGATTGTGAGAACT
tctcaattaatgtttttgtctttttttttgtttaaaaaattggtttccaatttagGAACTCAGTGGCATTGTTCCAGCTCGAGAAAAGCAAAAGATTGTGAGAACTGCTATCAGCAAG
aattaat putative branch site (score: 3)
tttcc putative PPT
attaatgtttttgtct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttaatactgttgaagaattcataattttccacattggaaattctcaattaatgtttttgtctttttttttgtttaaaaaattggtttccaatttagGAACTCAGTGGCATTGTTCCAGCTCGAGAAAAGCAAAAGATTGTGAGAACTGCTATCAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG