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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGGATATTTAACTGCACCTCCTGTGGGGGCATCGATTGCACCTCATAATGACTGGAAACGATCAGAATTCCTTTTGGATCATGAAAAGCTTCAGCAGgtaagatgtggctgacaagttgaaatgttttaataggcaaagtcacatttagtattaaaatcattgcataacctctcggatctagtgtcacaactgctaatttatgattaaatgacttgcattcctcccttggttcag

Basic information

species Glycine max
transcript GLYMA20G35990.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14205428|gb|BG839106.1|BG839106
EST:     ATGACTGGAAACGATCAGAATTCCTTTTGGATCATGAAAAGCTTCAGCAG                         ATACCCAGAGGAGAATATAAACAAGTACCKCCTCAAAATCTCTCAGGCAGA
genomic: ATGACTGGAAACGATCAGAATTCCTTTTGGATCATGAAAAGCTTCAGCAGgtaagatgtg ... cttggttcagATACCCAGAGGAGAATATAAACAAGTACCACCTCAAAATCTCTCAGGCAGA
EST: gi|12773285|gb|BG238212.1|BG238212
EST:     ATGACTGGAAACGATCAGAATTCCTTTTGGATCATGAAAAGCTTCAGCAG                         ATACCCAGAGGAGAATATAAACAAGTACCACCTCAAAATCTCTCAAGCAGA
genomic: ATGACTGGAAACGATCAGAATTCCTTTTGGATCATGAAAAGCTTCAGCAGgtaagatgtg ... cttggttcagATACCCAGAGGAGAATATAAACAAGTACCACCTCAAAATCTCTCAGGCAGA
EST: gi|22932072|gb|BU549211.1|BU549211
EST:     ATGACTGGAAACGATCAGAATTCCTTTTGGATCATGAAAAGCTTCAGCAG                         ATACCCAGAGGAGAATATAAACAAGTACCACCTCAAAATCTCTCAGGCAGA
genomic: ATGACTGGAAACGATCAGAATTCCTTTTGGATCATGAAAAGCTTCAGCAGgtaagatgtg ... cttggttcagATACCCAGAGGAGAATATAAACAAGTACCACCTCAAAATCTCTCAGGCAGA
EST: gi|298173874|gb|HO017210.1|HO017210
EST:     ATGACTGGAAACGATCAGAATTCCTTTTGGATCATGAAAAGCTTCAGCAG                         ATACCCAGAGGAGAATATAAACAAGTACCACCTTAAAATCTCTCAGGCAGA
genomic: ATGACTGGAAACGATCAGAATTCCTTTTGGATCATGAAAAGCTTCAGCAGgtaagatgtg ... cttggttcagATACCCAGAGGAGAATATAAACAAGTACCACCTCAAAATCTCTCAGGCAGA
EST: gi|254324005|gb|GR836237.1|GR836237
EST:     ATGACTGGAAACGATCAGAATTCCTTTTGGATCATGAAAAGCTTCAGCAG                         ATACCCAGAGGAGAATATAAACAAGTACCACCTCAAAATCTCTCAG-CAGA
genomic: ATGACTGGAAACGATCAGAATTCCTTTTGGATCATGAAAAGCTTCAGCAGgtaagatgtg ... cttggttcagATACCCAGAGGAGAATATAAACAAGTACCACCTCAAAATCTCTCAGGCAGA
EST: gi|12773703|gb|BG238630.1|BG238630
EST:     GAATGCCTTTTGGATCATGAAAAGCTTCAGCAG                         ATACCCAGAGGAGAATATAAACAAGTACCACCTCAAAATCTCTCAGGCAGA
genomic: GAATTCCTTTTGGATCATGAAAAGCTTCAGCAGgtaagatgtg ... cttggttcagATACCCAGAGGAGAATATAAACAAGTACCACCTCAAAATCTCTCAGGCAGA
EST: gi|16347758|gb|BI973353.1|BI973353
EST:     ATGACTGGAAACGATCAGAATTCCTTTTGGATCATGAAAAGCTTCAGCAG                         ATACCCAGAGGAGAATATAAACAAGTACCACCTCAAAATCTCTCAGGCAGA
genomic: ATGACTGGAAACGATCAGAATTCCTTTTGGATCATGAAAAGCTTCAGCAGgtaagatgtg ... cttggttcagATACCCAGAGGAGAATATAAACAAGTACCACCTCAAAATCTCTCAGGCAGA
EST: gi|6726099|gb|AW310498.1|AW310498
EST:     ATGACTGGAAACGATCAGAATTCCTTTTGGATCATGAAAAGCTTCAGCAG                         ATACCCAGAGGAGAATATAAACAAGTACCACCTCAAAATCTCTCAGGCAGA
genomic: ATGACTGGAAACGATCAGAATTCCTTTTGGATCATGAAAAGCTTCAGCAGgtaagatgtg ... cttggttcagATACCCAGAGGAGAATATAAACAAGTACCACCTCAAAATCTCTCAGGCAGA