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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatggtaaatcaaagtggtttagatttaatggtttgagagtgtctttctcttgtgcacgcatgaactgcagcttacattgtagtgtttcgaaattttcagCCCAGAACAACAGCAACAGCAGGCAGACCAGAACAACGCTGCAATGGATTTGATAAACAGCGTTGTAGGTGTCGACGAGGAAGGCCGGTCCCGACAGAGG

Basic information

species Glycine max
transcript GLYMA20G35990.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6566860|gb|AW234492.1|AW234492
EST:     TTGAAAAACGATTCCGAACCGGAGAGAGAAGATGGCAACTCCCCCTACAG                         CCCAGAACAACAGCAACAGCAGGCAGACCAGAACAACGCTGCAATGGATTT
genomic: TTGAAAAACGATTCCGAACCGGAGAGAGAAGATGGCAACTCCCCCTACAGgttatagctc ... aaattttcagCCCAGAACAACAGCAACAGCAGGCAGACCAGAACAACGCTGCAATGGATTT
EST: gi|19935390|gb|BQ080420.1|BQ080420
EST:     TTGAAAAACGATTCCGAACCGGAGAGAGAAGATGGCAACTCCCCCTACAG                         CCCAGAACAACAGCAACAGCAGGCAGACCAGAACAACGCTGCAA
genomic: TTGAAAAACGATTCCGAACCGGAGAGAGAAGATGGCAACTCCCCCTACAGgttatagctc ... aaattttcagCCCAGAACAACAGCAACAGCAGGCAGACCAGAACAACGCTGCAA
EST: gi|298192905|gb|HO033339.1|HO033339
EST:     TTGAAAAACGATTCCGAACCGGAGAGAGAAGATGGCAACTCCCCCTACAG                         CCCAGAACAACAGCAACAGCA
genomic: TTGAAAAACGATTCCGAACCGGAGAGAGAAGATGGCAACTCCCCCTACAGgttatagctc ... aaattttcagCCCAGAACAACAGCAACAGCA
EST: gi|24205492|gb|BU964745.1|BU964745
EST:     TTGAAAAACGATTCCGAACCGGAGAGAGAAGATGGCAACTCCCCCTACAG                         CCCAGAACAACAGCAACAGCAGGCAGACCAGAACAACGCTGCAATGGATTT
genomic: TTGAAAAACGATTCCGAACCGGAGAGAGAAGATGGCAACTCCCCCTACAGgttatagctc ... aaattttcagCCCAGAACAACAGCAACAGCAGGCAGACCAGAACAACGCTGCAATGGATTT
EST: gi|21888203|gb|BQ741416.1|BQ741416
EST:     TTGAAAAACGATTCCGAACCGGAGAGAGAAGATGGCAACTCCCCCTACAG                         CCCAGAACAACAGCAACAGCAGGCAGACCAGAACAACGCTGCAATGGATTT
genomic: TTGAAAAACGATTCCGAACCGGAGAGAGAAGATGGCAACTCCCCCTACAGgttatagctc ... aaattttcagCCCAGAACAACAGCAACAGCAGGCAGACCAGAACAACGCTGCAATGGATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctcttgtgcacgcatgaactgcagcttacattgtagtgtttcgaaattttcagCCCAGAACAACAGCAACAGCAGGCAGACCAGAACAACGCTGCAATGGATTTGATAAACAGCGTTGTAGGTGTCGACGAGGAAGGCCGGTCCCGACAGAGG
                        agcttac  putative branch site (score: 3)
                                                ttttc  putative PPT
                                             aaattttca  TA-rich tract