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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaagccacagtctatttgtcttgccttgtacatatttattggctttatgcattttttggattagaaatatttttaatctagttaatttcttcctccaattttaatcatgcaatcagctcattattattattaatttggtgtaacagGTTTATAGCAGTGCCTTGCGGTTGGTGCGTTCTATG

Basic information

species Glycine max
transcript GLYMA20G35990.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14205428|gb|BG839106.1|BG839106
EST:     AGTCTGCAATATACATTGCTGCTGCTCATGCATTGAAACCAAATTATTCA                         GTTTATAGCAGTGCCTTGCGGTTGGTGCGTTCTATG
genomic: AGTCTGCAATATACATTGCTGCTGCTCATGCATTGAAACCAAATTATTCAgtaagaagcc ... ggtgtaacagGTTTATAGCAGTGCCTTGCGGTTGGTGCGTTCTATG
EST: gi|12773285|gb|BG238212.1|BG238212
EST:     AGTCTGCAATATACATTGCTGCTGCTCATGCATTGAAACCAAATTATTCA                         GTTTATAGCAGTGCCTTGCGGTTGGTGCGTTCTATG
genomic: AGTCTGCAATATACATTGCTGCTGCTCATGCATTGAAACCAAATTATTCAgtaagaagcc ... ggtgtaacagGTTTATAGCAGTGCCTTGCGGTTGGTGCGTTCTATG
EST: gi|22932072|gb|BU549211.1|BU549211
EST:     GTCTGCAATATACA-TGCNNNCTGCTCATGCATTGAAACCAAATTATTCA                         GTTTATAGCAGTGCCTTGCGGTTGGTGCGTTCTATG
genomic: GTCTGCAATATACATTGC-TGCTGCTCATGCATTGAAACCAAATTATTCAgtaagaagcc ... ggtgtaacagGTTTATAGCAGTGCCTTGCGGTTGGTGCGTTCTATG
EST: gi|298173874|gb|HO017210.1|HO017210
EST:     AGTCTGCAATATACATTGCTGCTGCTCATGCATTGAAACCAAATTATTCA                         GTTTATAGCAGTGCCTTGCGGTTGGTGCGTTCTATG
genomic: AGTCTGCAATATACATTGCTGCTGCTCATGCATTGAAACCAAATTATTCAgtaagaagcc ... ggtgtaacagGTTTATAGCAGTGCCTTGCGGTTGGTGCGTTCTATG
EST: gi|254324005|gb|GR836237.1|GR836237
EST:     AGTCTGCAATATACATTGCTGCTGCTCATGCATTGAAACCAAATTATTCA                         GTTTATAGCAGTGCCTTGCGGTTGGTGCGTTCTATG
genomic: AGTCTGCAATATACATTGCTGCTGCTCATGCATTGAAACCAAATTATTCAgtaagaagcc ... ggtgtaacagGTTTATAGCAGTGCCTTGCGGTTGGTGCGTTCTATG
EST: gi|16347758|gb|BI973353.1|BI973353
EST:     AGTCTGCAATATACATTGCTGCTGCTCATGCATTGAAACCAAATTATTCA                         GTTTATAGCAGTGCCTTGCGGTTGGTGCGTTCTATG
genomic: AGTCTGCAATATACATTGCTGCTGCTCATGCATTGAAACCAAATTATTCAgtaagaagcc ... ggtgtaacagGTTTATAGCAGTGCCTTGCGGTTGGTGCGTTCTATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctccaattttaatcatgcaatcagctcattattattattaatttggtgtaacagGTTTATAGCAGTGCCTTGCGGTTGGTGCGTTCTATG
                                    tattaat  putative branch site (score: 2)
                            attattattattaatt  TA-rich tract