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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATATAGCAGATATTATTTCTGTATCAGCATGTGCTGATCTTACCTTACCACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTGgtaagcaacagtttcattgatctgggtttatccatattgtacaaatttattgcttccttcctccgcacttatcaaacattgtttaatcaattgcacaaaa...

Basic information

species Glycine max
transcript GLYMA20G35990.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35990.2 (Glycine max), 5'ss of exon 12
lower sequence: Vv02s0025g02520.t01 (Vitis vinifera), 5'ss of exon 13
AGATATAGCAGATATTATTTCTGTATCAGCATGTGCTGATCTTACCTTACCACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTGgtaagcaacagtttcattgatctgggtttatccatattgtacaaatttattgcttccttcctccgcactt-atcaaacattgtttaatcaattgcacaaaa-
 ||| |  |||||||| ||||||||||||||||||||||||| || |||||| | ||||||||||||||||| ||||||| | ||||| |||||| |||||||||||      |||||| ||    |  |    |||| ||  ||  | |   |||     |      |  || ||  |  || |   | | |||       
CGATGTTCCAGATATTGTTTCTGTATCAGCATGTGCTGATCTGACTTTACCAGCAGGTGCAGGCCTCTGCATTGATACAATTCATGGACCAGTTTTCTTGgtaagcatattagtcattgttc--actccagaattattctatgaacatctaagttcaaattttattgttagatgaagaagggtcttgcccagtgcttgctca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14205428|gb|BG839106.1|BG839106
EST:     CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTG                         GTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTA
genomic: CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTGgtaagcaaca ... gattatcaagGTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTA
EST: gi|22932072|gb|BU549211.1|BU549211
EST:     CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTG                         GTTGCTGACTCTTGGGAATCANNNGATGGCTGGCTGGATGCACTTCGTCTA
genomic: CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTGgtaagcaaca ... gattatcaagGTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTA
EST: gi|12773703|gb|BG238630.1|BG238630
EST:     CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTG                         GTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTA
genomic: CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTGgtaagcaaca ... gattatcaagGTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTA
EST: gi|13479456|gb|BG508799.1|BG508799
EST:     CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTG                         GTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTA
genomic: CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTGgtaagcaaca ... gattatcaagGTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTA
EST: gi|207683952|gb|GD667439.1|GD667439
EST:     CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTG                         GTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTA
genomic: CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTGgtaagcaaca ... gattatcaagGTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTA
EST: gi|6726099|gb|AW310498.1|AW310498
EST:     CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTG                         GTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTA
genomic: CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTGgtaagcaaca ... gattatcaagGTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTA