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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttactctgtacactttctgttcaaacacttttgattttcttcacaagcatggtcattgcatattgagcccttgttactgactcatggaatctattacagGCGCTCAATAACTGGGGACTTGCTCTTCAG

Basic information

species Glycine max
transcript GLYMA20G35990.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254324005|gb|GR836237.1|GR836237
EST:     CAACACGGAACTATGAAAAAGCAGTTCAACTTAACTGGAACAGTCCTCAG                         GCGCTCAATAACTGGGGACTTGCTCTTCAG
genomic: CAACACGGAACTATGAAAAAGCAGTTCAACTTAACTGGAACAGTCCTCAGgttcttctca ... tctattacagGCGCTCAATAACTGGGGACTTGCTCTTCAG
EST: gi|15814226|gb|BI786501.1|BI786501
EST:     CAACACGGAACTATGAAAAAGCAGTTCAACTTAACTGGAACAGTCCTCAG                         GCGCTCAATAACTGGGGACTTGCTCTTCAG
genomic: CAACACGGAACTATGAAAAAGCAGTTCAACTTAACTGGAACAGTCCTCAGgttcttctca ... tctattacagGCGCTCAATAACTGGGGACTTGCTCTTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcatggtcattgcatattgagcccttgttactgactcatggaatctattacagGCGCTCAATAACTGGGGACTTGCTCTTCAG
                              tactgac  putative branch site (score: 1)
                                           aatctatta  TA-rich tract