Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatctttgaaatgtgatttcatctcaatctataaacagaagaatctctttagattttgaaaatgcacctctaatcttcatttttacttggattatcaagGTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTAGTTTACACAATTTATGTGCGAGGCAAAAGTGATGTACTGGCTGGTATAA

Basic information

species Glycine max
transcript GLYMA20G35990.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35990.2 (Glycine max), 3'ss of exon 12
lower sequence: Vv02s0025g02520.t01 (Vitis vinifera), 3'ss of exon 13
--aaatctt-tgaaatgtgatttcatctcaatctataaacagaagaatctctttagattttgaaaatgcacctctaatcttcatttttacttggattatcaagGTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTAGTTTACACAATTTATGTGCGAGGCAAAAGTGATGTACTGGCTGGTATAA
   |||| | | |  ||| ||||  |||  |     ||  |  | | | || ||| ||     || |  |    | |      |    |    ||||    |||||||||| || |||||||| |||||||| ||| | |||||| ||||| ||||||||||||||| ||  ||||| ||||| |||||  |||| ||||| |
atgaatcatattagttgttattt--tctggacaagaaagaaacacagtttccttatataa-ataattttattaatgagtgatttccgcataatgattcctcagGTTGCTGATTCATGGGAATCCTTGGATGGATGGTTTGATGCAATTCGTTTAGTTTACACAATTTTTGCTCGAGGTAAAAGCGATGTGTTGGCAGGTATTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14205428|gb|BG839106.1|BG839106
EST:     CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTG                         GTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTA
genomic: CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTGgtaagcaaca ... gattatcaagGTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTA
EST: gi|22932072|gb|BU549211.1|BU549211
EST:     CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTG                         GTTGCTGACTCTTGGGAATCANNNGATGGCTGGCTGGATGCACTTCGTCTA
genomic: CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTGgtaagcaaca ... gattatcaagGTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTA
EST: gi|12773703|gb|BG238630.1|BG238630
EST:     CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTG                         GTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTA
genomic: CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTGgtaagcaaca ... gattatcaagGTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTA
EST: gi|13479456|gb|BG508799.1|BG508799
EST:     CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTG                         GTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTA
genomic: CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTGgtaagcaaca ... gattatcaagGTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTA
EST: gi|207683952|gb|GD667439.1|GD667439
EST:     CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTG                         GTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTA
genomic: CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTGgtaagcaaca ... gattatcaagGTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTA
EST: gi|6726099|gb|AW310498.1|AW310498
EST:     CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTG                         GTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTA
genomic: CACCTGGTGCAGGCCTCTGCATAGATACAAGTTATGGATCAGTTTACTTGgtaagcaaca ... gattatcaagGTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctttagattttgaaaatgcacctctaatcttcatttttacttggattatcaagGTTGCTGACTCTTGGGAATCATTGGATGGCTGGCTGGATGCACTTCGTCTAGTTTACACAATTTATGTGCGAGGCAAAAGTGATGTACTGGCTGGTATAA
                       ctctaat  putative branch site (score: 3)
                          taatcttcattttta  TA-rich tract