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gtatgacttccattgctttgctctttgaaatgttatttatggaggataagaaaaggaaccttcattcttatccttgttatttgttgaacataaagtttctaactcttttgtaattttcacttgtagACTCAGTCGCCTGTGGCTGATGATGTTCATGACTCATCTTGGAGTCCTTCTCACATTGGGGATGGTTCTGCAGCTTCGGTTAGACAACCTGATGGTGCTA
species | Glycine max |
transcript | GLYMA20G33140.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGCTCCAGAACCTGGG ACTCAGTCGCCTTGTTGGTCTTGTATGATGTTCATGACTCATCTTGGAGTCEST: gi|193453399|gb|FK418139.1|FK418139
genomic: TTGCTCCAGAACCTGGGgtatgacttc ... tcacttgtagACTCAGTCGCC-TG-TGG-C-TG-ATGATGTTCATGACTCATCTTGGAGTC
EST: GGGATAACTTGAGGGCACAAATTCCTCCAAAACTTGCTCCAGAACCTGGG ACTCAGTCGCCTGTGGCTGATGATGTTCATGACTCATCTTGGAGTCCTTCT
genomic: GGGATAACTTGAGGGCACAAATTCCTCCAAAACTTGCTCCAGAACCTGGGgtatgacttc ... tcacttgtagACTCAGTCGCCTGTGGCTGATGATGTTCATGACTCATCTTGGAGTCCTTCT
ccttgttatttgttgaacataaagtttctaactcttttgtaattttcacttgtagACTCAGTCGCCTGTGGCTGATGATGTTCATGACTCATCTTGGAGTCCTTCTCACATTGGGGATGGTTCTGCAGCTTCGGTTAGACAACCTGATGGTGCTA
ttctaac putative branch site (score: 1)
ttttcactt putative PPT
tcttttgtaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgacttccattgctttgctctttgaaatgttatttatggaggataagaaaaggaaccttcattcttatccttgttatttgttgaacataaagtttctaactcttttgtaattttcacttgtagACTCAGTCGCCTGTGGCTGATGATGTTCATGACTCATCTTGGAGTCCTTCTCACATTGGGGATGGTTCTGCAGCTTCGGTTAGACAACCTGATGGTGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT