Sequence
atgc intronic sequence ATGC exonic sequencegtagttccgtggcatggttatactgcatcattgccatatatggctatgtgaatattaaatttcttcaactgcagCCAGAGAACTTATTACTTACAGCTGAAGGACATATTAAAATAGCCGATTTTGGGAGTGTGAAGCCTATGCAGGATAGCCAAATAACTGTCCTTCCAAATG
Basic information
species | Glycine max |
transcript | GLYMA20G33140.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G33140.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G04510.2 (Arabidopsis thaliana), 3'ss of exon 4
---gtagttccgtggcatggttatactgcatcattgccatatatggctatg-tgaatattaaatttcttcaactg-cagCCAGAGAACTTATTACTTACAGCTGAAGGACATATTAAAATAGCCGATTTTGGGAGTGTGAAGCCTATGCAGGATAGCCAAATAACTGTCCTTCCAAATG
|| || | | || | | || | | || ||| || | | | || |||||| || || |||| ||||| | || || || | || ||||| ||||| || || |||||||| ||||| ||||| |||||||||||||| || || || || || ||||
gtagtttctctttcgaatagcttctcttttatggtcttaacaatagctgtgctaagtgtt---tttcttgaaatggtagCCGGAGAATCTGTTGCTGACTTCAGATGGACACATTAAGATTGCGGATTTTGGAAGTGTAAAGCCGATGCAGGATAGCCAGATCACAGTTCTACCTAATG
upper sequence: GLYMA20G33140.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv13s0074g00100.t01 (Vitis vinifera), 3'ss of exon 5
gtagttccgtggcatggttatactgcatcattgccatatatggctatgtgaatattaaatttct-tcaactgcagCCAGAGAACTTATTACTTACAGCTGAAGGACATATTAAAATAGCCGATTTTGGGAGTGTGAAGCCTATGCAGGATAGCCAAATAACTGTCCTTCCAAATG
||| || | || ||||| || || || || |||||| ||| | || ||||||| |||||||| ||||||| || || |||||||| ||||| || |||||||||||||| ||||||||||||||||| | ||| || |||||||| ||||
gtattttaat----tgcctatacaatatttcctttgcatgtgaaaat-----tattaacttttcatgaattgcagCCGGAGAACTTGCTACTTACTGCAGATGGACATATCAAAATTGCTGATTTTGGGAGTGTAAAGCCTATGCAGGATAGTCTAATTACCGTCCTTCCCAATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atactgcatcattgccatatatggctatgtgaatattaaatttcttcaactgcagCCAGAGAACTTATTACTTACAGCTGAAGGACATATTAAAATAGCCGATTTTGGGAGTGTGAAGCCTATGCAGGATAGCCAAATAACTGTCCTTCCAAATG
tttcttc CT-rich tract
tatgtgaatattaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagttccgtggcatggttatactgcatcattgccatatatggctatgtgaatattaaatttcttcaactgcagCCAGAGAACTTATTACTTACAGCTGAAGGACATATTAAAATAGCCGATTTTGGGAGTGTGAAGCCTATGCAGGATAGCCAAATAACTGTCCTTCCAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC