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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTCGTCTATCAGAGGATGAGGCACGATTCTATGCAGCTGAAGTTGTTGATGCTCTCGAATACATACATAATTTGGGAGTCATACATCGTGATATTAAGgtagttccgtggcatggttatactgcatcattgccatatatggctatgtgaatattaaatttcttcaactgcag

Basic information

species Glycine max
transcript GLYMA20G33140.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33140.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G10540.1 (Arabidopsis thaliana), 5'ss of exon 4
AGGTCGTCTATCAGAGGATGAGGCACGATTCTATGCAGCTGAAGTTGTTGATGCTCTCGAATACATACATAATTTGGGAGTCATACATCGTGATATTAAGgtag-ttccgtggcatg-gttatactgcatcattgccatatatggc--tatgtgaatattaaat-ttcttcaactgcag--------
|||||||||||| |||||||| || || |||||    || ||||||||||||||||| || || ||||||||| ||||| | |||||||| ||||||||||||| |||  |  ||    | ||     || |   |||   | |||   || |   ||  || | | | | || |            
AGGTCGTCTATCTGAGGATGAAGCTCGGTTCTACAGTGCAGAAGTTGTTGATGCTCTTGAGTATATACATAATATGGGACTGATACATCGAGATATTAAGgtagcttctctttcacatatcatctcttataagatccaacaagggcatcattttgctaacaattatcccttaattttgattgtgtag

upper sequence: GLYMA20G33140.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G04510.2 (Arabidopsis thaliana), 5'ss of exon 4
AGGTCGTCTATCAGAGGATGAGGCACGATTCTATGCAGCTGAAGTTGTTGATGCTCTCGAATACATACATAATTTGGGAGTCATACATCGTGATATTAAGgtagttccg---tggcatggttatactgcatcattgccatatatggctatg-tgaatattaaatttcttcaactg-cag
|||||| ||||| |||||||| || || |||||  | || |||||||| |||||||| || || ||||||| | ||||| | || ||||| ||||||||||||||| |    | | || | |   ||       |   |   || ||| || | | | ||   |||||| || ||  ||
AGGTCGGCTATCGGAGGATGAAGCTCGGTTCTACACTGCAGAAGTTGTGGATGCTCTTGAGTATATACATAGTATGGGACTGATTCATCGAGATATTAAGgtagtttctctttcgaatagcttctcttttatggtcttaacaatagctgtgctaagtgtt---tttcttgaaatggtag

upper sequence: GLYMA20G33140.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0074g00100.t01 (Vitis vinifera), 5'ss of exon 5
AGGTCGTCTATCAGAGGATGAGGCACGATTCTATGCAGCTGAAGTTGTTGATGCTCTCGAATACATACATAATTTGGGAGTCATACATCGTGATATTAAGgtagttccgtggcatggttatactgcatcattgccatatatggctatgtgaatattaaatttct-tcaactgcag
||||||| | |||||| |||| || || |||||||||||||||||||| |||||||| ||||| || |||| | | ||| | ||||| || |||||||||||| ||   | ||     |||||   ||         || ||   ||     |||||| |||   | || |||||
AGGTCGTTTGTCAGAGAATGAAGCTCGCTTCTATGCAGCTGAAGTTGTAGATGCTCTTGAATATATTCATAGTCTAGGATTGATACACCGGGATATTAAGgtattttaattgc----ctatacaatatttcctttgcatgtgaaaat-----tattaacttttcatgaattgcag